Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq97926 196 6e-45 seq44434 96.9 4e-15 >seq97926 Length=3727 Score = 196 bits (216), Expect = 6e-45 Identities = 959/1499 (64%), Gaps = 58/1499 (4%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||| | || | |||| |||||||| || | |||||| | | Sbjct 587 CCGCAGCACATGCTCATGAGAGTGTCGGTCGGAATCCACGGAAAAAATATTGATGAAGCC 646 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || | |||| | | || ||||| ||||| | || || ||||| Sbjct 647 ATCGAGACCTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCCCCCACTCTCTT 705 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || || || ||| ||||||| |||||||| |||||| ||||| || Sbjct 706 CAACGCAGGAACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGA 765 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | ||| | || || |||| || || | | |||| || | ||||| || | || || Sbjct 766 CAGCATCGAAGGCATTTATGACACGCTGAAGCAGTGCGCCCTCATCTCCAAATCAGCGGG 825 Query 75451 GGGTATTGGGATG-----CACATCCATGATGTGA-----GAGCCAATAAATCTCGTATTC 75500 || ||||| || || | ||| | | | |||| || ||| | Sbjct 826 AGGAATTGGCGTGGCTGTCAGCTGCATCAGATCAACCGGGAGC---TACATCGCC----- 877 Query 75501 GGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 75560 || || || || | || | || | | || ||||| | || | ||| ||| | Sbjct 878 --GGCACCAACGGCAACTCCAACGGCCTAGTCCCCATGCTGAGAGTTTACAACAACACGG 935 Query 75561 CGCGCTATGTAAATCAAGCGGGGCGTCGCAAG----GGGTCCATCGCGGTCTACTTGGAA 75616 | || || || | || | | ||| | || || || |||| | ||| |||| Sbjct 936 CACGTTACGTCGACCAGG-GAGGCAACAAGAGACCCGGAGCCTTCGCCATGTACCTGGAG 994 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGA 75675 || ||||| ||| | | |||||| | ||| | | || ||| ||| | || || Sbjct 995 CCGTGGCACTTTGATGTGTTTGAGTTCTTGGAGCTGAAGAAA-AACACAGGGAAGGAGGA 1053 Query 75676 GGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 | | ||||| || || | ||||||||| || ||||| ||||||||| | || Sbjct 1054 GCAAAGAGCCAGAGACCTTTTCTACGGCCTGTGGATCCCGGACCTCTTCATGAAGAGAGT 1113 Query 75736 TGAGGAGGGTGGTCAA---TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA 75792 ||| | ||| |||||||| | ||||| || |||| || || || || Sbjct 1114 ---GGAAAGCAACCAAGACTGGTCTCTGATGTGTCCGAACGAGGCTCCTGGGCTGGATGA 1170 Query 75793 C-GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCA 75851 || | ||| ||||||||||| || |||||||| || ||||| ||||||| | | || Sbjct 1171 GTGCTGGGGG-GAGGAGTTTGAGGCGCTCTACACCAAATATGAGAAGGAGGGCCGGGTCA 1229 Query 75852 ATGCGACTGTACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910 | ||| || || | | | | | ||| | || ||| | | || ||||| || || Sbjct 1230 A-GCGTGTGGTGAAGGCTCAGCAACTGTGGCACGCCATTATTGAGTCCCAGACAGAAACC 1288 Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970 || ||||| || ||||| ||||| || || || |||| |||||| ||||| ||||| || Sbjct 1289 GGTACACCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTG 1348 Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || || ||||| || || || ||||| || || | || ||||| | | || ||| Sbjct 1349 GGCACCATCAAATGCAGCAACCTCTGCACAGAGATCGTTGAATACACCAGTGACGACGAG 1408 Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGC 76090 ||| || || ||| |||| || ||||| || | ||| |||| ||| || Sbjct 1409 GTGGCGGTCTGTAATCTGGCGTCCATCGCTCTCAACATGTACGTCACCCCTGAG---CGG 1465 Query 76091 ACTTTTGATTATGAAAAACTTCATGAAATCA-CAAAG--ATTGTTACCAAAAATCTAAAC 76147 || ||||| | | ||||||| | | | ||||| || || ||||| || ||| Sbjct 1466 ACCTTTGACTTTAAAAAACTGGCCTACGTGACCAAAGTAATCGT---GAAAAACCTGAAC 1522 Query 76148 CGAGTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACA 76206 ||||||||| || || || || || || || | ||||| || | ||| || Sbjct 1523 AAGATCATTGACATCAACTTCTACCCAGTGCCCGAAGCCGAG-AAGTCCAACAAGCGTCA 1581 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGC 76266 ||| || || || | ||||| ||||| || ||||||| || || || || ||| | Sbjct 1582 CAGGCCAATCGGGATCGGTGTCCAAGGACTGGCGGATGCCTTCATCCTGATGCGTTACCC 1641 Query 76267 ATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGC 76326 ||||| || || || | | || | ||||| || ||||| || |||| Sbjct 1642 CTTTGAAAGCCCCGAGGCTCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACTACGC 1701 Query 76327 ATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGG 76386 ||||||||||| || || || |||| | || || |||| ||||| | | || Sbjct 1702 TTCCCTGGAGGCAAGCTGCGATCTGGCCCGCGAGCACGGCGCCTACGAGACGTACCAAGG 1761 Query 76387 TTCTCCCGCGTC-CCAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTC 76444 ||||| ||| |||||| | || |||| ||| ||||||| || || || | | Sbjct 1762 CTCTCC--TGTCAGCAAGGGCATCCTCCAGTATGACATGTGGG-AGAAGACGCCGA-CAG 1817 Query 76445 AAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 76502 | | | |||||| | | || ||||| ||| | | || | | ||||||| Sbjct 1818 ACCTGTGGGACTGGAAGCTGCTGAAGGAGAAGATCGCCAAACACGGCGTGAGGAACAGTC 1877 Query 76503 TTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 76562 | |||||||| || ||||| ||||| ||||||||||| ||| |||| || || || | Sbjct 1878 TGTTGATGGCCCCGATGCCGACAGCGTCCACCGCACAGATCCTGGGCAACAACGAGTCTA 1937 Query 76563 TTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTG 76622 | || | ||||| | ||||||||| | ||| |||| | || ||||| || | Sbjct 1938 TCGAGGCCTACACCAGCAACATCTACACCCGCAGAGTCCTCTCCGGAGAGTTCCAGATCG 1997 Query 76623 TCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 |||| ||||| |||| ||| | | | || || || ||| | |||| |||||| Sbjct 1998 TCAATCCTCACCTGCTCAAAGACTTGACGGAGCGAGGACTGTGGAGCGAGGAGATGAAG 2056 >seq44434 Length=8273 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 |||||||| || || || |||||||| ||||| |||||||| || || |||| ||||| Sbjct 2403 TCACAGACAGAAACCGGCACACCATACATGCTCTACAAGGACGCCTGCAACAGAAAGAGC 2344 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| ||||| |||| || ||||| | ||||| ||||| || || |||||||| Sbjct 2343 AACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTATGCACAGAGATCGTAGAGTAC 2284 Query 76016 ACA 76018 ||| Sbjct 2283 ACA 2281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595577340698560