Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq78611 100 8e-16 seq97926 98.7 3e-15 >seq78611 Length=12060 Score = 100 bits (110), Expect = 8e-16 Identities = 172/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | ||||||||| || ||||| || | || || |||||||| Sbjct 4419 TCCATAGACTTGATGAGACGACGCTGGATGTAACCGGTCTCGGCAGTCTTGACAGCTGTG 4478 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| | | || ||||| || |||||||| | |||| ||| || || Sbjct 4479 TCGATAAGACCTTCTCTGCCTCCCATGGCGTGGAAGAAGAACTCTGTTGGTGTCAGGCCA 4538 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 | | ||||| |||| || || || | ||| || || |||| || |||| | Sbjct 4539 GCCAGGTAGGAGTTCTCTACAAAGCCTCTGCTCTCAGGACCGTAATCATC---CTTGATG 4595 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 ||||| ||||| || | || | ||||| | ||||| ||||| || |||||||||||| Sbjct 4596 AAGTGAGGCAGTGTGCGGTGTTTGAAGCCGAAGGGGATTCGCTTACCCTCAACGTTCTGC 4655 Query 302812 TGTCCCA 302818 || |||| Sbjct 4656 TGCCCCA 4662 >seq97926 Length=3727 Score = 98.7 bits (108), Expect = 3e-15 Identities = 188/276 (68%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 155474 TGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTC 155533 |||||| || || | ||||| || || || | ||| | || | ||| ||||| |||| Sbjct 1549 TGGGTAGAAGTTGATGTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACGTA 1490 Query 155534 TGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATAGA 155593 || | ||| | ||||||| || || | || |||| ||| | || || Sbjct 1489 GGCCAGTTTTTTAAAGTCAAAGGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGGA 1430 Query 155594 CGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG---TATTCTACAATCTCACAGCA 155650 |||||||||||| ||||| | ||| |||||| ||| ||||| || ||||| ||| Sbjct 1429 CGCCAGATTACAGACCGC---CACCTCGTCGTCACTGGTGTATTCAACGATCTCTGTGCA 1373 Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710 ||||| | ||||||||||| | ||||| |||||| || ||||| || || || Sbjct 1372 GAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTC 1313 Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTG 155746 ||||| || ||||| || || || || || |||| Sbjct 1312 TTTGTACAGCATGTACGGTGTACCGGTTTCTGTCTG 1277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469308361645894