Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2473 143 3e-28 seq124338 129 7e-24 seq123057 129 7e-24 seq121817 129 7e-24 seq115450 129 7e-24 seq78611 93.3 5e-13 seq59937 86.0 8e-11 >seq2473 Length=3525 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||||| || |||||||||||||| | | | || Sbjct 1956 GCTTGGCCAGCTCGCCAGGCAGCAGAAGGCGGACAGCGGTCTGGATCTCCCTGGAGGTGA 1897 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| ||||| |||||||||| || || || ||||||| |||| | Sbjct 1896 TGGTGGAGCGTTTGTTGTAGTGCGCCAGGCGCGACGCTTCTCCTGCGATGCGCTCGAAGA 1837 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||||||||||||||||| ||| | |||| |||||| ||| ||| |||| Sbjct 1836 TGTCGTTGACAAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATCCCCGTGTCTGGGT 1777 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1776 GCACCTGCTTCAGCACCTTGTA 1755 >seq124338 Length=5045 Score = 129 bits (142), Expect = 7e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | ||| || ||||||||||||||||| | | | ||| | Sbjct 946 TGGCCAGCTCACCGGGCAGCAGCAGACGGACGGCGGTCTGGATCTCCCTGGAGGTGATGG 887 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| |||| ||||| ||| ||||| | ||||||| || | |||| Sbjct 886 TGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAAGCCTCACCGGCGATGCGCTCAAAGATGT 827 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | ||||| |||||||||| ||| | |||| ||||||||| ||||||||| | Sbjct 826 CCCCCACAAAGGAGTTCATGATGCCCATAGCCTTGGAGGAGATGCCGGTGTCGGGGTGGA 767 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| ||||| ||||| Sbjct 766 CCTGCTTCAGCACTTTGTA 748 >seq123057 Length=1382 Score = 129 bits (142), Expect = 7e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||| ||||||||||||||||| | | | ||| | Sbjct 1149 TGGCCAGCTCACCGGGCAGCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGG 1208 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| |||| || || ||| ||||| | ||||||| || | |||| Sbjct 1209 TGGAGCGCTTGTTGTAGTGAGCAAGGCGGGAAGCCTCACCGGCGATGCGCTCAAAGATGT 1268 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | ||||| |||||||||| ||| | |||| ||||||||| ||||||||| | Sbjct 1269 CTCCCACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGAA 1328 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| | ||||||||| Sbjct 1329 CCTGCTTCAACACCTTGTA 1347 >seq121817 Length=4244 Score = 129 bits (142), Expect = 7e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||| ||||||||||||||||| | | | ||| | Sbjct 1908 TGGCCAGCTCACCGGGCAGCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGG 1967 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| |||| || || ||| ||||| | |||| || || | |||| Sbjct 1968 TGGAGCGCTTGTTGTAGTGAGCAAGGCGGGAAGCCTCACCGGCGATACGCTCAAAGATGT 2027 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | ||||| |||||||||| ||| | |||| ||||||||| ||||||||| | Sbjct 2028 CCCCCACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGA 2087 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| ||||||||||| Sbjct 2088 CCTGCTTCAGCACCTTGTA 2106 >seq115450 Length=7461 Score = 129 bits (142), Expect = 7e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||| ||||||||||||||||| | | | ||| | Sbjct 6886 TGGCCAGCTCACCGGGCAGCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGG 6827 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| |||| || || || ||||| | ||||||| || | |||| Sbjct 6826 TGGAGCGCTTGTTGTAGTGAGCGAGGCGTGAAGCCTCACCGGCGATGCGCTCAAAGATGT 6767 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | ||||| |||||||||| ||| | |||| ||||||||| ||||||||| | Sbjct 6766 CCCCCACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGA 6707 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| ||||||||||| Sbjct 6706 CCTGCTTCAGCACCTTGTA 6688 >seq78611 Length=12060 Score = 93.3 bits (102), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||||||||| ||||||||||| |||| ||||| || ||| |||||| Sbjct 1367 CGTCATCTCCTTTGACGGTTCCTACGTCAACTACCGTCACTTGGCTCTGCTTTGCGACAC 1308 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 |||| |||||||| || ||||| |||| || |||||| ||||||| Sbjct 1307 CATGACTTGCCGCGGTCACCTGATGGCCATCACACGTCACGGCATCAACCG 1257 >seq59937 Length=3816 Score = 86.0 bits (94), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||| | |||||||| ||| | || | |||||| | ||||||||| Sbjct 2650 GCCGCCAACTATTTGGACATCAAAGGCCTGTTAGACGTCACCTGCAAGACGGTGGCCAAC 2591 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 |||||||| ||||| | |||||||||||| | ||||| || |||||||| Sbjct 2590 ATGATCAAAGGCAAAACCCCCGAGGAGATCAGGAAGACATTCAACATCAA 2541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6096219509150654