Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq97926 203 3e-47 seq85215 113 4e-20 >seq97926 Length=3727 Score = 203 bits (224), Expect = 3e-47 Identities = 984/1543 (64%), Gaps = 39/1543 (3%) Strand=Plus/Minus Query 138479 TCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAA 138538 ||||||| || | ||| | || | || ||| || || |||| | |||| || Sbjct 2024 TCAAGTCTTTGAGCAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACTCTGCGGG 1965 Query 138539 CGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGG 138598 ||| |||||| ||||| | | ||| | || |||||||| ||||| ||||| || |||| Sbjct 1964 TGTAGATGTTGCTGGTGTAGGCCTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGG 1905 Query 138599 TCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTT 138658 ||| |||||||| |||| ||| ||| |||| | ||||| ||| | Sbjct 1904 ACGCTGTCGGCATCGGGGCCATCAACAGACTGTTCCTCACGCCGTGTTTGGCGATCTTCT 1845 Query 138659 CCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTA 138718 |||| ||| | ||||||||||| || | || | || | |||||| || ||||| | Sbjct 1844 CCTTCAGCAGCTTCCAGTCCCACAGGTCTGTCGGCGTCTTCTCCCACATGTCATACTGGA 1785 Query 138719 ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCA 138778 || ||| || | ||| ||||| ||||| ||||| | || ||| | |||| Sbjct 1784 GGATGCCCTTGCTGACAGGAGAGCCTTGGTACGTCTCGTAGGCGCCGTGCTCGCGGGCCA 1725 Query 138779 ACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCA 138838 ||| ||| ||||| || | | | ||||| || || ||| ||||| ||||||| Sbjct 1724 GATCGCAGCTTGCCTCCAGGGAAGCGTAGTAGATGGTCTCGAAGATCTGGATGTTGAGCA 1665 Query 138839 ATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTT 138898 | ||||||| ||| || | || || | || |||| || || ||||| |||| Sbjct 1664 GCTGAGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCCGCCAGTCCTT 1605 Query 138899 GCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG---ATAG 138955 | || || | |||| || | || ||| || ||| || |||||||| | | Sbjct 1604 GGACACCGATCCCGATTGGCCTGTGACGCTTGTTGGAC---TTCTCGGCTTCGGGCACTG 1548 Query 138956 GATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT--CGTATG 139013 | || |||| | || ||||| ||||| | ||| ||||| || || || |||| | Sbjct 1547 GGTAGAAGTTGATGTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACGTAGG 1488 Query 139014 CTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTT 139073 | | | || ||| || | || ||| || | ||||| ||| |||| Sbjct 1487 C--CAGTTTTTTAAAGTCAAAGGT----CCG--CTCAGGGGTGACGT--ACA----TGTT 1442 Query 139074 GACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAAT 139133 || | || || || | || || |||||||| |||||| | ||||||| || || Sbjct 1441 GAGAGCGATGGACGCCAGATTACAGACCGCCACCTCGTCGTCACTGGTGTATTCAACGAT 1382 Query 139134 TTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTT 139193 || | || | || || || ||||| || || | ||| || || ||||| || | ||| Sbjct 1381 CTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTT 1322 Query 139194 ACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAA 139253 || || |||||||| ||||| |||||||| || ||||| || | ||| |||||| Sbjct 1321 GCAGGCGTCTTTGTACAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGC 1262 Query 139254 TTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTC 139313 | ||| | | ||| | | |||| | | | || ||| || || Sbjct 1261 GTGCCACAGTTGCTGAGCCTTCACCACACGCTTGACCCGGCCCTCCTTCTCATATTTGGT 1202 Query 139314 GTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACA 139373 |||||| | || || || || || ||| || | || || || ||||| Sbjct 1201 GTAGAGCGCCTCAAACTCCTCCCCCCAGCACTCATCCAGCCCAGGAGCCTCGTTCGGACA 1142 Query 139374 CATGAGCGACCATACGCCGTTCGCCTT-GACGCGCCTCATGAACAGATCCGGAATCCACA 139432 ||| || ||||| | ||| || || || | | ||||||| || ||||| ||||||| Sbjct 1141 CATCAGAGACCAGTCTTGGTT-GCTTTCCACTCTCTTCATGAAGAGGTCCGGGATCCACA 1083 Query 139433 AAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAA 139492 || | | | || | || | | || ||| || |||| |||| | | Sbjct 1082 GGCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTTTTCTTCAGCTCCA 1023 Query 139493 GGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---TTTCC 139549 ||| ||||| || ||| |||||| || ||||| || ||||| | || || | || Sbjct 1022 AGAACTCAAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCT 963 Query 139550 GTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCA 139609 ||||| || || ||||||| ||| | | || ||| | || | || ||| || | | Sbjct 962 TGTTGCCTCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTA 903 Query 139610 GACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGT- 139668 | ||| | | | |||||||||| |||| || | | || || | || | Sbjct 902 GGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGATCTGATG-CAGCTG 844 Query 139669 ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTC 139727 ||| | ||| ||||| || | ||||||| || | |||| | || | | || || Sbjct 843 ACAGCCACGCCAATTCCTCCCGCTGATTTGGAGATGAGGGCGCACT-GCTTCAGCGTGTC 785 Query 139728 GTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGG 139787 || || ||| ||||||||||||| ||| | || ||| ||||| || || || || Sbjct 784 ATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGG 725 Query 139788 TAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGTTTCGACA 139846 || || || || || ||||| || ||||| ||||| || || | | |||| Sbjct 724 CCTGTTGGTTCCTGCGTTGAAGAGAGTGGGGGAGGCGTGGGTGAACCACTTCTCT-GACA 666 Query 139847 TCAATTCGTACGTTTCGATGGCGCTCA-CAATATCCCTTCCGTGGATACCGACAGAGACT 139905 || | ||| || |||||||| ||| |||||| |||||||||| ||||| || ||| Sbjct 665 GCAGGTTGTAGGTCTCGATGGC-TTCATCAATATTTTTTCCGTGGATTCCGACCGACACT 607 Query 139906 CGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--AC 139963 | ||| ||||| || || || |||||||| ||| | ||| || ||| || || Sbjct 606 CTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGAC 547 Query 139964 CGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || ||| || |||||| |||||||| | | ||| |||||| Sbjct 546 CG--CTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATC 506 >seq85215 Length=7700 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || | || || || ||| Sbjct 6654 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTTTAGAGGTCGAGCCCAGT 6713 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||| || |||||||| || ||||| || || Sbjct 6714 GACACCATTGAAAACGTCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 6773 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| |||||||| |||||||| ||| | | | | || || || ||| Sbjct 6774 CAGAGGTTGATCTTCGCCGGGAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 6833 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || || | ||| |||| | || ||||| Sbjct 6834 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTCCGTGGAGG 6880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449149296569360