Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2473 203 5e-46 seq121817 183 5e-40 seq115450 181 2e-39 seq123057 179 6e-39 seq124338 176 7e-38 seq24207 120 5e-21 seq8668 111 2e-18 seq123333 87.8 3e-11 >seq2473 Length=3525 Score = 203 bits (224), Expect = 5e-46 Identities = 192/245 (78%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| ||||| ||| Sbjct 1995 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCAGGCA 1936 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| || |||||||||||||| | || | ||| ||| ||| ||||| | Sbjct 1935 GCAGAAGGCGGACAGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGTTTGTTGTAGT 1876 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| || || ||||||| |||| |||||||||||||||||||||| Sbjct 1875 GCGCCAGGCGCGACGCTTCTCCTGCGATGCGCTCGAAGATGTCGTTGACAAACGAGTTCA 1816 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| ||| ||| |||||||||||||| |||||||||| Sbjct 1815 TGATGCCCATGGCCTTGGAGGAGATCCCCGTGTCTGGGTGCACCTGCTTCAGCACCTTGT 1756 Query 1485710 AAACA 1485714 | ||| Sbjct 1755 ACACA 1751 >seq121817 Length=4244 Score = 183 bits (202), Expect = 5e-40 Identities = 187/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || |||||||| ||||||| || ||| ||| Sbjct 1866 TGTACTTGGTGACGGCCTTGGTGCCCTCAGACACGGCGTGTTTGGCCAGCTCACCGGGCA 1925 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| ||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 1926 GCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 1985 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| ||||| | |||| || || | ||||| ||||| ||||||| Sbjct 1986 GAGCAAGGCGGGAAGCCTCACCGGCGATACGCTCAAAGATGTCCCCCACAAAGGAGTTCA 2045 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 2046 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 2105 Query 1485710 AAAC 1485713 | || Sbjct 2106 ACAC 2109 >seq115450 Length=7461 Score = 181 bits (200), Expect = 2e-39 Identities = 189/246 (77%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || |||||||| ||||||| || ||| ||| Sbjct 6928 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGTTTGGCCAGCTCACCGGGCA 6869 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | |||||| ||||||||||||||||| | || | ||| ||| ||||||||| ||| Sbjct 6868 GCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 6809 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| ||||| ||||| | ||||||| || | ||||| ||||| ||||| Sbjct 6808 GAGCG--AGGCGTGAAGCCTCACCGGCGATGCGCTCAAAGATGTCCCCCACAAAGGAGTT 6751 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||| Sbjct 6750 CATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTT 6691 Query 1485708 GTAAAC 1485713 ||| || Sbjct 6690 GTACAC 6685 >seq123057 Length=1382 Score = 179 bits (198), Expect = 6e-39 Identities = 186/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || |||||||| ||||||| || ||| ||| Sbjct 1107 TGTACTTGGTGACAGCCTTGGTGCCCTCAGACACGGCGTGTTTGGCCAGCTCACCGGGCA 1166 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| ||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 1167 GCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 1226 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| ||||| | ||||||| || | ||||| ||||| ||||||| Sbjct 1227 GAGCAAGGCGGGAAGCCTCACCGGCGATGCGCTCAAAGATGTCTCCCACAAAGGAGTTCA 1286 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| | |||||||| Sbjct 1287 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGAACCTGCTTCAACACCTTGT 1346 Query 1485710 AAAC 1485713 | || Sbjct 1347 ACAC 1350 >seq124338 Length=5045 Score = 176 bits (194), Expect = 7e-38 Identities = 184/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 |||||||||||||||||||| ||||| || || ||||| ||||||| || ||| ||| Sbjct 986 TACTTGGTGACGGCCTTGGTGCCCTCAGACACAGCGTGTTTGGCCAGCTCACCGGGCAGC 927 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | ||| || ||||||||||||||||| | || | ||| ||| ||||||||| | | Sbjct 926 AGCAGACGGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGTGG 867 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||||||| ||||| | ||||||| || | ||||| ||||| ||||||||| Sbjct 866 GCCAGGCGGGAAGCCTCACCGGCGATGCGCTCAAAGATGTCCCCCACAAAGGAGTTCATG 807 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| ||||||||| ||||||||| |||||||| ||||| ||||| Sbjct 806 ATGCCCATAGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACTTTGTAC 747 Query 1485712 AC 1485713 || Sbjct 746 AC 745 >seq24207 Length=2658 Score = 120 bits (132), Expect = 5e-21 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || |||||||| ||||||| || ||| ||| Sbjct 2360 TGTACTTGGTGACGGCCTTGGTGCCCTCAGACACGGCGTGTTTGGCCAGCTCACCGGGCA 2419 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || ||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 2420 ACAGCAGACGGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 2479 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTC 1485623 | || |||||| ||||| | ||||||| || Sbjct 2480 GGGCAAGGCGGGAAGCCTCACCGGCGATGCGCTC 2513 >seq8668 Length=15884 Score = 111 bits (122), Expect = 2e-18 Identities = 137/185 (74%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || || ||||| ||||| || |||||||| ||||||| || ||| ||| Sbjct 12537 TGTACTTTGTCACAGCTTTGGTGCCCTCAGACACGGCGTGTTTGGCCAGCTCCCCGGGCA 12596 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||| |||||||| | ||| | | || ||| ||| ||| ||||| || | Sbjct 12597 GCAGCAGCCTCACTGCGGTCTGCACCTCCCTGCTGGTGATGGTGGCGCGTTTGTT-GTAC 12655 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| ||| || || ||| |||| | || | || ||| ||||| ||||||||| Sbjct 12656 TGAGCCAGCCGGGACGCTTCTGTGGCGATTCTCTCAAACAGGTCATTGACGAACGAGTTC 12715 Query 1485649 ATGAT 1485653 ||||| Sbjct 12716 ATGAT 12720 >seq123333 Length=523 Score = 87.8 bits (96), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 794586 GTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGC 794645 |||||||| ||| || ||||||||||| ||| |||||||||||||||| || ||||| Sbjct 146 GTCCTTGATGTATGTATCGATGAGGAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGC 205 Query 794646 GATCTGGAAGCCATAAAAGCA 794666 ||||||||| ||||| || || Sbjct 206 GATCTGGAAACCATAGAAACA 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7902091988164218