Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq78724 156 3e-32 seq32483 143 2e-28 seq61900 109 4e-18 seq49244 93.3 3e-13 >seq78724 Length=7557 Score = 156 bits (172), Expect = 3e-32 Identities = 921/1459 (63%), Gaps = 20/1459 (1%) Strand=Plus/Plus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 ||| || | ||| || ||||| || | || || ||||| || || || |||||||||| Sbjct 3613 CACGTTCAAAATGCCGTTGGCGTCAATGTCGAAGGTGACCTCGATCTGTGGGACCCCTCG 3672 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 |||||||||||| ||| || | ||| | ||||| ||| || ||||| || | Sbjct 3673 AGGAGCAGGTGGGAGTCCTGTCAGCTCAAACTTGCCCAGCAGATTGTTGTCTTTGGTCAT 3732 Query 281551 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 281610 || || || ||| | | |||||| || | | || || || || || || || Sbjct 3733 GGCTCTCTCCCCTTCGTAGACTTGGATGAGGACCCCGGGCTGGTTGTCAGAGTAGGTGGT 3792 Query 281611 AAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 281669 || ||||| ||| |||| || || || ||||| | | ||| | ||||| | Sbjct 3793 GAAGG-TCTGGGTTTGTTTAGTGGGGATGGTGGTGTTGCGTTTAATCAGGGATGTCATGA 3851 Query 281670 TACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 281729 || || ||||| || | ||| || || ||||| | ||||| | || | | || | Sbjct 3852 CTCCTCCGGCTGTCTCGATACCCAGGGACAGAGGCGCCACATCCAGCAGCAGCAGATCCT 3911 Query 281730 GAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 281789 ||| || | || | ||| ||||| || || || | || ||||| || || | Sbjct 3912 GAACGTTGCCTGAGGTATCACCTGAGAGAATGGCGGCCTGGACGGCGGCACCGTAAGCCA 3971 Query 281790 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAA 281849 | || || || || || | | | || || | | |||||||| |||| || | Sbjct 3972 CCGCCTCGTCTGGGTTGATGCTCTTGTTCAGCTCCCTGCCATTGAAGAAATCCTGCAGGA 4031 Query 281850 GTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 281908 ||| ||| | || || || |||| || |||||||| | || || || || | |||| Sbjct 4032 GTT-TCTGGATTTTGGGGATTCGAGTGGAGCCTCCAACCAGGACGATGTCGTGAATCTGT 4090 Query 281909 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAAC 281968 || |||| ||| | |||| | |||| || || || || | | || ||| Sbjct 4091 CCCTTGTCCATTTTGGCATCCCTCAGGGCTTTCTCCACTGGCTCTAATGTTCCCCTGAAC 4150 Query 281969 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTC 282026 | ||| || || || || ||||| ||| || || || || | || || |||| | Sbjct 4151 AGGTCAGAGCACAGCTCCTCGAAGCGAGCCCTGGT--GATGGAGGTGTAGAAGTCAACAC 4208 Query 282027 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAG 282086 | || |||| ||| || | ||||| | | || | || || || | | || | Sbjct 4209 CCTCAAACAGAGAGTCGATCTCAATGCTGGCCTGGGAGCTGGAGGACAGGGTTCTCTTGG 4268 Query 282087 CACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT-TGATTCAAATCTGTT 282145 | | ||||| ||||| | || || | || ||| | || | ||| | | || | Sbjct 4269 CCCTCTCACAAGCTGTGCGCAGCCTCCTCAATGCTCTCT-TGTTATGACTGATGTCCTTC 4327 Query 282146 TTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTT 282203 || | ||| |||||||| || || ||| | ||| | || | || || ||||| |||| Sbjct 4328 TTGTGTTTCCTCTTGAACTCCTCCACAAA--ATGGTTGACCATGCGGTTGTCAAAGTCTT 4385 Query 282204 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 282263 | || |||| | ||| | ||| | || ||| | || | || | || ||||| | | Sbjct 4386 CTCCACCCAGGTGAGTGTCTCCAGCTGTGGCTTTGACCTCAAAGATACCGTCTTCGATTG 4445 Query 282264 ACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 282323 || | | || ||| ||| || || |||| ||||| || || || || |||| Sbjct 4446 TCAGGATGGACACGTCAAAGGTGCCTCCGCCCAGGTCAAAGATCAGGACGTTACGTTCTG 4505 Query 282324 -TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 || |||| ||| || ||||| || |||| ||||| || || || || || || || Sbjct 4506 CTGACTTGCCTTTG-TCCAGACCGTATGCAATGGCAGCTGCTGTGGGCTCGTTGATGATC 4564 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 |||| ||||| || || || || ||||| ||||||||||| || | ||||| ||| Sbjct 4565 CTCAGGACATTCAGTCCTGCGATGACGCCTGCGTCTTTAGTGGCCTGACGCTGTGAGTCG 4624 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 || || ||||| || || ||||| || || | | || || || | || || Sbjct 4625 TTGAAGTATGCTGGGACTGTAATGACTGCGTTGGACACCGTTTGGCCGAGGTAGGCCTCA 4684 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--AGAATATTGCT 282560 || | | ||||| || | | ||| || || | | || || ||| || | Sbjct 4685 GCAATCTCCTTCATCTTCACCAGGACCATGGAGGAGACCTCCTCAGGGTTGAAGGTT--T 4742 Query 282561 TGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAA 282620 || || || ||| |||| || | ||| || ||| | | || || | Sbjct 4743 TGTTCTCCCCTTTGTATTCCACTTGAATTTTTGGCTTCCCTCCATCTCCGACCACCTTGA 4802 Query 282621 ATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATC 282680 | ||||| | ||||| |||| || || | | |||| ||| | ||| ||||| | || Sbjct 4803 AGGGCCAGTGCTTCATGTCTGCCTGCACCACTGGCTCATCAAACTTTCTTCCAATCAGTC 4862 Query 282681 GTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTC 282740 |||| |||||||| | ||| ||| | ||||| | || | || | |||||||| || | Sbjct 4863 GTTTGGCATCAAATACAGTGTTGCTGGGATTCAAAGCCACCTGGTTCTTGGCTGCGTCCC 4922 Query 282741 CAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGAT 282800 | ||||| ||||| || || || | ||||| || || || | || || || | Sbjct 4923 CGATCAGCCTCTCTGTGTCCGTGAACGCCACATAGCTGGGGGTGGTCCTGTTGCCCTGGT 4982 Query 282801 CATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTC 282860 |||| || || ||||| ||||| |||| || | || || ||||| | || || | Sbjct 4983 CATTGGCGATGATTTCTACTTTTCCATGCTGGAAAACCCCCACACAGGAGTAGGTGGTAC 5042 Query 282861 CTAAATCAATACCAATAGC 282879 | | ||||| || ||||| Sbjct 5043 CCAGGTCAATGCCGATAGC 5061 >seq32483 Length=14385 Score = 143 bits (158), Expect = 2e-28 Identities = 425/656 (65%), Gaps = 0/656 (0%) Strand=Plus/Plus Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 || ||||| || || || || | | || | ||||| || | | | || | |||| Sbjct 13282 TTGTCAAAGTCCTCCCCACCAAGGTGTGTGTCTCCTGCGGTGGATTTCACCTCAAAAATG 13341 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 ||||| |||| || || | | || ||| ||| || || || | ||||| || ||| Sbjct 13342 CCATCCTCAATAGTCAGGATGGACACGTCAAAGGTGCCTCCGCCGAGGTCAAAGATCAGT 13401 Query 282311 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 ||||| ||| || |||||| | ||| || || | || || || || || Sbjct 13402 ACATTGCGCTCTCCCCTTTTACCTTTATCTAAACCGTAAGCGATGGCTGCTGCTGTCGGC 13461 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 ||||| || || |||| || ||| || |||| || || ||||| || ||||||||| Sbjct 13462 TCATTGATGATCCTCAGAATATTCAGCCCAGAGATCACCCCAGCATCCTTGGTGGCTTGT 13521 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA 282490 || || || || || ||||| || ||||| || || || || | | || | ||| Sbjct 13522 CTCTGAGAGTCATTGAAATAAGCTGGAACTGTGATGACTGCGTTGGACACCCTCTGTCCC 13581 Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA 282550 | || || || | | ||||||||| | | ||| || || |||| |||||| Sbjct 13582 AGGTAGGCCTCAGCAATCTCCTTCATTTTAACCAGGACCATGGAGGAGATTTCCTCTGGA 13641 Query 282551 GAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTA 282610 | | ||||| ||| || ||| || | | | ||| || | | || | Sbjct 13642 TAGAAGGCCTTGGTCTCACCTTTATACTCCACCTGGACTTTTGGCTTTCCATTATCACTG 13701 Query 282611 ATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTA 282670 || || || || ||||| ||||| || | || ||| | ||| ||||| | ||| Sbjct 13702 ATCACCTTGAAAGGCCAGAGCTTCATGTCAGCCTGGACAACTGCGTCGTTAAACTTTCTT 13761 Query 282671 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTG 282730 || || | | ||| |||||||| || || |||||||| || | || | || | ||| Sbjct 13762 CCGATGAGCCTTTTGGCATCAAAGATTGTGTTGGTTGGGTTCATAGCCACCTGGTTCTTG 13821 Query 282731 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 282790 || ||||||||||| || ||||| || ||||| | ||||| ||||| || | Sbjct 13822 GCAGCATCTCCAATGAGCCTCTCTGTGTCNGTAAAGGCCACATAGCTGGGAGTGGTCCTG 13881 Query 282791 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 || || |||||||| |||||||| || ||||| |||| || | || || ||||| Sbjct 13882 TTGCCCTGATCATTGGCAATAATCTCCACTTTGCCATGCTGGAAAACCCCAACACA 13937 >seq61900 Length=14013 Score = 109 bits (120), Expect = 4e-18 Identities = 113/147 (77%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| || |||||||| || || || || || | ||| ||| Sbjct 5898 TTTTTGTCTAGGCCATATGCAATGGCTGCAGCAGTGGGCTCGTTGATGATGCGCAACACA 5839 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| ||| | || |||||||| |||||||| | || || ||||| || || Sbjct 5838 TTTAGCCCAGAAATGGTCCCAGCATCTTTGGTGGCTTGACGCTGAGAGTCGTTGAAGTAA 5779 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 ||||||||||| ||||| |||| |||| Sbjct 5778 GCAGGAACAGTGATAACTGCAT-TGTT 5753 Score = 91.5 bits (100), Expect = 1e-12 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| |||||| ||||| ||||||||||| | ||||| || |||||||| ||||||||| Sbjct 7537 GCAGACACATTGAGAATGCCATTGGCATCAATGTCAAAGGTCACTTCAATCTGAGGGACC 7478 Query 281486 CCTCTCTGAGCAGGTGGGATCCC 281508 ||||| |||||||||| || || Sbjct 7477 CCTCTGGGAGCAGGTGGAATACC 7455 >seq49244 Length=18477 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| ||||||||||||||| || || ||||| | | ||| Sbjct 15137 TTTTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTTGGCTCGTTGATAATACGAAGGACA 15078 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| || | || | || |||||||| ||||| || | || || || || || || Sbjct 15077 TTAAGTCCCGAGATAGTCCCCGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 15018 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| || || | || |||| |||||| Sbjct 15017 GCAGGCACGGTTACTACAGCATTTGTTAC 14989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3734097618120012