Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq38610 84.2 4e-11 seq17877 84.2 4e-11 >seq38610 Length=14328 Score = 84.2 bits (92), Expect = 4e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 58377 GAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCA 58436 |||| | |||||||| | | || || || || || || | || || |||||||||| Sbjct 4017 GAGCTCTGTGGTGGTATTTCGTCTCCAAGGGCATCGAGTATCTGGACACTGTGTTTTTCA 3958 Query 58437 TACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGT 58496 | || |||||||| || || || |||| ||| || ||||| || || || | || |||| Sbjct 3957 TCCTGAGGAAAAAATTCAACCAGGTTACCTTCCTGCACGTCTACCACCACTGCACCATGT 3898 Query 58497 TTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAG 58540 | || | | ||| | || || |||||| | |||||||| ||| Sbjct 3897 TCACGCTCTGGTGGATTGGCATCAAATGGGTGGCAGGAGGGCAG 3854 >seq17877 Length=22871 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444 ||||||||||| || || ||||| | |||| | | || ||||| |||||||| || ||| Sbjct 2424 TGGTGGTACTACATTTCCAAAGGAGTGGAATTCCTGGACACAGTCTTTTTCATCCTGAGG 2483 Query 58445 AAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTTACTTTA 58504 || ||||| || || || ||||| || ||||| || || || | || ||||| | | Sbjct 2484 AAGAAGTTCAACCAGGTCAGCTTCCTCCACGTCTACCACCACTGCACCATGTTCATCCTC 2543 Query 58505 GGATGGGTAGGTATTAAATGG 58525 | ||| | ||||| || ||| Sbjct 2544 TGGTGGATTGGTATCAAGTGG 2564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901908578736320