Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq97926 212 6e-50 seq85215 120 3e-22 seq44434 116 4e-21 >seq97926 Length=3727 Score = 212 bits (234), Expect = 6e-50 Identities = 971/1528 (64%), Gaps = 28/1528 (2%) Strand=Plus/Minus Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 |||| ||| ||| | || ||| | |||| || | ||| ||||| |||| ||| || | Sbjct 2030 GCTCCGTCAAGTCTTTGAGCAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACTC 1971 Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350 || || | |||||| || | | || | |||||||||||||||| ||||| | Sbjct 1970 TGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATAGACTCGTTGTTGCCCAGGATCTGTG 1911 Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTA 148410 |||| | || || ||||| || | || ||| ||| | || ||| | || | Sbjct 1910 CGGTGGACGCTGTCGGCATCGGGGCCATCAACAGACTGTTCCTCACGCCGTGTTTGGCGA 1851 Query 148411 TTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGT 148470 | || |||||| | ||||||||| || | ||| ||| | ||||||||| | Sbjct 1850 TCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCTGTCGGCGTCTTCTCCCACATGTCAT 1791 Query 148471 ACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCG 148530 |||| || ||||| ||| | || ||| | ||||| ||| | |||||| | Sbjct 1790 ACTGGAGGATGCCCTTGCTGACAGGAGAGCCTTGGTACGTCTCGTAGGCGCCGTGCTCGC 1731 Query 148531 CCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGT 148590 ||||| |||||||| ||||| || | ||||||| || |||||| || || ||| Sbjct 1730 GGGCCAGATCGCAGCTTGCCTCCAGGGAAGCGTAGTAGATGGTCTCGAAGATCTGGATGT 1671 Query 148591 TGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAA 148650 |||||||| ||| |||||| | || ||||| | | | || || || || | Sbjct 1670 TGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCCGCCA 1611 Query 148651 GGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGA 148710 | || || || || | || || |||| ||| ||||||| | || ||| ||| Sbjct 1610 GTCCTTGGACACCGATCCCGATTGGCCTGTGACGCTTGTTGGACTT-CTCG-GCT-TCGG 1554 Query 148711 GC---GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA 148767 || || ||| |||| ||| |||||||||| || || ||| | || || || | Sbjct 1553 GCACTGGGTAGAAGTTGATGTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCA 1494 Query 148768 TTCTGCGCAGCAATTCAAAATCGTACTTG---TCATCTACGATGCATCGGTTCACGGCGA 148824 | ||| || ||| || | | ||| || | | ||| | |||| Sbjct 1493 CGTAGGCCAGTTTTTTAAAGTCAAAGGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGA 1434 Query 148825 TAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGC 148884 | || || ||||| || || ||| ||| || | |||| || |||||||| | || Sbjct 1433 TGGACGCCAGATTACAGACCGCCACCTCGTCGTCACTGGTGTATTCAACGATCTCTGTGC 1374 Query 148885 ACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGT 148944 | || |||||||||||||| ||||| |||| || |||||||| |||||||| |||| Sbjct 1373 AGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 1314 Query 148945 CCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCA 149004 | |||||||||||||||||| || ||||| ||| | || | ||| | || Sbjct 1313 CTTTGTACAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCGTGCCACA 1254 Query 149005 GGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCC 149064 | | ||| || ||| ||| | || ||||||| ||| ||| || || ||| Sbjct 1253 GTTGCTGAGCCTTCACCACACGCTTGACCCGGCCCTCCTTCTCATATTTGGTGTAGAGCG 1194 Query 149065 GCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCG 149124 ||| ||| |||| || |||| || || || || || || || ||| ||||| || | Sbjct 1193 CCTCAAACTCCTCCCCCCAGCACTCATCCAGCCCAGGAGCCTCGTTCGGACACATCAGAG 1134 Query 149125 ACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACA 149184 |||| | || | ||| | |||||| || || || || | ||| || |||| | Sbjct 1133 ACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAAGAGGTCCGGGATCCACAGGCCGTAGA 1074 Query 149185 TGAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGT-TGAGCACGC 149241 ||||| | || | |||| || || || |||| ||| | || || | Sbjct 1073 AAAGGTCTCTGGCTCTTTGC--TCCTCCTTCCCTGTGTTTTTCTTCAGCTCCAAGAACTC 1016 Query 149242 TGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC------CTTGCGCT 149295 || | || |||||||||||| | ||||| |||| || || |||| | Sbjct 1015 -AAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTG---T 960 Query 149296 TGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGC 149355 |||| ||||||||||||| || || ||||||| | |||| | ||| || | | || Sbjct 959 TGCCTCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAGGC 900 Query 149356 CACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGT 149415 | ||| ||||||| || | ||| || ||| | || | | || Sbjct 899 CGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAG 840 Query 149416 TGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGA 149475 ||||| || || || | | || |||||| ||||| | ||||| || | Sbjct 839 CCACGCCAATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAA 780 Query 149476 TGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAAC 149535 |||| |||||||||||| |||||||| ||||| ||||| | ||| || || Sbjct 779 TGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGT 720 Query 149536 GCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCT 149595 || || || ||| | |||||| |||||| || || | |||| || || | Sbjct 719 TGGTTCCTGCGTTGAAGAGAGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGT 660 Query 149596 CGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCA 149655 ||| | ||||| | || || | | || ||||| || | | || | ||| | Sbjct 659 TGTAGGTCTCGATGGCTTCATCAATATTTTTTCCGTGGATTCCGACCGACACTCTCATGA 600 Query 149656 GCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG--CCGTTTTC 149713 |||| |||||||||||||| ||||||||| || || | || |||| ||| || Sbjct 599 GCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCG--CTC 542 Query 149714 TAGTGTCTTGTAGCCAAAGTACTTGTAG 149741 || |||||| |||||||| | |||||| Sbjct 541 CAGAGTCTTGAAGCCAAAGAAGTTGTAG 514 >seq85215 Length=7700 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| | ||| | | | || || |||| Sbjct 6857 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCT 6799 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || | || ||||||||| |||||||||||||| || || ||||| Sbjct 6798 GCTTCCCGGCGAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCT 6739 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||||| | |||| ||||| ||||||| || || | |||| ||| ||||| | Sbjct 6738 TTGCCTTGACGTTTTCAATGGTGTCACTGGGCTCGACCTCTAAAGTGATGGTCTTGCCAG 6679 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || |||||||| Sbjct 6678 TGAGGGTCTTCACAAAGATCTGCAT 6654 >seq44434 Length=8273 Score = 116 bits (128), Expect = 4e-21 Identities = 93/112 (83%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||||||||| | ||| ||||||||| ||||||| ||||| |||| || | Sbjct 2283 TGTACTCTACGATCTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 2342 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||||| |||||||| ||||||||||| |||||||| ||| ||| ||||| Sbjct 2343 TGCTCTTTCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTC 2394 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 148515 TACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTC 148574 || || ||| || | || ||||| |||||||| ||||| || || ||||||| || ||| Sbjct 1721 TAAGGGCCGAGCTCAGCTGCCAGCTCGCAGCTGGCCTCCAGGGCAGCGTAGTAGATGGTC 1780 Query 148575 TCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGC 148634 || || || ||||||||||| ||| || ||||||| | || ||||| | Sbjct 1781 TCAAAGATCTGGATGTTGAGCAGCTGGGCCTCCTGGCTTTCGAATGGGTAACGCATAAGA 1840 Query 148635 ACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTG 148681 | ||| ||||| || || ||||| || || | ||||| |||| ||| Sbjct 1841 ATAAAGGCGTCAGCCAGACCCTGCACTCCGATTCCAATTGGCCTGTG 1887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482616738268880