Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq29870 129 7e-25 seq1639 91.5 2e-13 >seq29870 Length=22874 Score = 129 bits (142), Expect = 7e-25 Identities = 238/343 (69%), Gaps = 11/343 (3%) Strand=Plus/Plus Query 176958 GGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTC 177017 || || ||| |||||| |||||| ||||| ||||||||| ||| | || ||||| ||| Sbjct 11758 GGCGAAGTGAAGTCGTCCACGTGGATGAAGGCGTCTCCCTGGATAAAGTTCTCGTAGTTC 11817 Query 177018 TCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATA-AGAGATCG--GTAGAGT 177074 | || | | ||||| || | || || | || || | |||| | ||||||| Sbjct 11818 TGCCTGGCCGGGCCGAGAACCACTGGCACTGTCCC---CACAGAGAGTGGGTTGTAGAGT 11874 Query 177075 TTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAG--G 177132 ||||| ||||| |||||| |||| | |||||||||||| || || ||||| |||||| | Sbjct 11875 TTTTCAGTAATGTAGTCCTTGTGGATGGAGTTCTCAAATGCCAGGTAGAACTTACAGCTG 11934 Query 177133 AAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATA 177192 || || |||| | |||| | || | ||||| || || | | | || ||| Sbjct 11935 GCAATGGT--GGGGAAGTAGTCTTGGTCAGAGATATACTCCCCAAAGGCTTGTCCATATG 11992 Query 177193 CATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCACGTGGTCGTTGT 177252 | || | || |||||||| ||||| ||||||| || | ||||||||| | || Sbjct 11993 CGTGAACCTCAATGTGTTTGTACAGCTCATTGTAGTATTTCACCCGCACGTGGTCCTGGT 12052 Query 177253 TCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGG 177295 |||| ||||| || | |||||| | | |||| | ||||| || Sbjct 12053 TCCAGTTGCTCACAATCCAGCAGATCAGCTTG-TTTTTGCTGG 12094 >seq1639 Length=7166 Score = 91.5 bits (100), Expect = 2e-13 Identities = 479/745 (64%), Gaps = 31/745 (4%) Strand=Plus/Plus Query 162264 CCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACG 162322 |||||| || | | || || || |||||||| || |||||||||||| ||| | | | Sbjct 979 CCACTTCACCACACGAGCAATGGCTTGCATGTCTGATGTGTCGTACTTG-ACATTAGCAG 1037 Query 162323 GCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGAC 162382 ||| || ||||||||| |||| ||||| ||||| ||||||| ||| || || || | Sbjct 1038 GCATGGATCCAGGAACGGAGGGCATCCTCTGCAGAGTGGCCCACAAGTGCTCATCAGGGC 1097 Query 162383 TATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTTATCGTATAGAATGTAAG 162442 | || || |||||| |||||||| || | | ||| | | || | || | | Sbjct 1098 TGTATGTGTCCTTCTCCCACTCCAGTAATTTCTGAACCTCTCTGTCCTGCAGCACATGTT 1157 Query 162443 AGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGT-ATA 162501 || ||| ||| || || | |||||| || | || || |||| ||| | ||| || Sbjct 1158 TCACAAAGGCCCTTGTGACCACAAAGTAGGCATTTCCTGAGAACATGGGGCT-CGTAATG 1216 Query 162502 GGAGGGGGCTCTTTGTCTTGAC--CCGTGTTGACTACCATTCCCTCTACGACCACGTGTC 162559 |||||||| |||| || | || ||| | ||| || | | ||| || Sbjct 1217 GGAGGGGG-GCTTT-TCCTCACATTCGTCTGGACAAC---TTGGTTGGTGACATTGTAAT 1271 Query 162560 TCTTCCTCCACCTGGCCATCTTACTGGTAG--ACGGGTG--TTCGGTCTCTAGACTGTTA 162615 | | ||| | | | || || |||| | |||| || | || | ||||| Sbjct 1272 GATAACGCCAACGG----TTTTTCTTGTAGTCATTGGTGGCCTCAGATTCCATGCTGTTT 1327 Query 162616 CGACCCCCCAAGGCCTTCAG---CTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAG 162672 | || | || |||||| |||| |||||||| |||||| || | ||| ||| Sbjct 1328 CTTCCGTTGAGGGACTTCAGAGCCTGA---ACCATCTCCCTATTGGTTTTGATGGGGAAG 1384 Query 162673 TCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACG-CTGAGTCCGTACAGATCCTG 162731 || || || ||| || | | || |||||| ||| ||| || ||||||| | Sbjct 1385 TCAGTCCCACAGGTGTTGAGCAGGTACCTCCACTGGACGTGTGA-CCCCAACAGATCTTT 1443 Query 162732 TAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCT 162791 | ||||| ||||| ||||| || | ||| || ||||| || || || || || || Sbjct 1444 CATGCAGTTGAGATCCGCCTGCACTCTTGACCATGAGGCGTATACCACTCTTTCTAATCT 1503 Query 162792 AGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACAT 162851 | |||| ||||| ||||| || || ||||| || || || ||| | ||| | Sbjct 1504 ACTGGCCACAAACACATTAGGTAAGCAGGAAACAATTGCCTCTACAGCC-TTCTGAAATT 1562 Query 162852 C--GGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCC 162909 | || | |||| || || || || ||||| | |||||||| | ||| | || Sbjct 1563 CCTTAGT-GGATTTCTGGTCCACATGCACACAGTAGATGTTCTGAGGAGTGTAAACAGCT 1621 Query 162910 CTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGG 162969 | || | | ||| |||||||| ||||| | || | ||| || || || || ||||| Sbjct 1622 CGTAGAAGGCGCTCAAACATCTCAATCTTCTCATGGATCACCATGGAGTAGGCAATGGGA 1681 Query 162970 AACTCAGCCTCCTCGCGACTGAGAG 162994 || || |||||| |||||||| Sbjct 1682 AAGTCTCTCTCCTCCTCACTGAGAG 1706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577469908515200