Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2473 167 3e-35 seq115450 149 9e-30 seq123057 140 5e-27 seq121817 140 5e-27 seq97926 134 2e-25 seq124338 131 2e-24 seq8668 98.7 1e-14 seq24207 93.3 6e-13 seq78611 87.8 3e-11 seq44434 87.8 3e-11 >seq2473 Length=3525 Score = 167 bits (184), Expect = 3e-35 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || ||| |||||||| | ||||| Sbjct 1755 TACAAGGTGCTGAAGCAGGTGCACCCA-GACACG--GGGATCTCCTCCAA---GGCCATG 1808 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| |||| ||||||| || || ||| Sbjct 1809 GGCATCATGAACTCGTTTGTCAACGACATCTTCGAGCGCATCGCAGGAGAAGCGTCGCGC 1868 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||| ||| ||| ||| | | | |||||||||||||| || ||| Sbjct 1869 CTGGCGCACTACAACAAACGCTCCACCATCACCTCCAGGGAGATCCAGACCGCTGTCCGC 1928 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||||| ||||||| ||||||||| ||||||||||||| Sbjct 1929 CTTCTGCTGCCTGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1977 >seq115450 Length=7461 Score = 149 bits (164), Expect = 9e-30 Identities = 171/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| ||| |||| ||||| Sbjct 6688 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 6741 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| ||||| | || ||||||| | ||||| ||| Sbjct 6742 GGCATCATGAACTCCTTTGTGGGGGACATCTTTGAGCGCATCGCCGGTGAGGCTTCACGC 6801 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || || | || |||||||||| ||| ||| | | | ||||||||||||||||| ||| Sbjct 6802 CTCGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCCGC 6861 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| |||||||| ||||||||||||| Sbjct 6862 CTGCTGCTGCCCGGTGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 6910 >seq123057 Length=1382 Score = 140 bits (154), Expect = 5e-27 Identities = 169/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||| | |||||||| |||||| |||| |||| ||| |||| ||||| Sbjct 1347 TACAAGGTGTTGAAGCAGGTTCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 1294 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| ||||| | || ||||||| | ||||| ||| Sbjct 1293 GGCATCATGAACTCCTTTGTGGGAGACATCTTTGAGCGCATCGCCGGTGAGGCTTCCCGC 1234 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || || | || |||||||||| ||| ||| | | | ||||||||||||||||| ||| Sbjct 1233 CTTGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCCGC 1174 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| |||||||| || |||||||||| Sbjct 1173 CTGCTGCTGCCCGGTGAGCTGGCCAAACACGCCGTGTCTGAGGGCACCA 1125 >seq121817 Length=4244 Score = 140 bits (154), Expect = 5e-27 Identities = 169/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| ||| |||| ||||| Sbjct 2106 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 2053 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| ||||| | || || |||| | ||||| ||| Sbjct 2052 GGCATCATGAACTCCTTTGTGGGGGACATCTTTGAGCGTATCGCCGGTGAGGCTTCCCGC 1993 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || || | || |||||||||| ||| ||| | | | ||||||||||||||||| ||| Sbjct 1992 CTTGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCCGC 1933 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| |||||||| || |||||||||| Sbjct 1932 CTGCTGCTGCCCGGTGAGCTGGCCAAACACGCCGTGTCTGAGGGCACCA 1884 >seq97926 Length=3727 Score = 134 bits (148), Expect = 2e-25 Identities = 207/292 (71%), Gaps = 10/292 (3%) Strand=Plus/Plus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 |||| || ||| ||||||| || | ||||| ||||| || || || || | | Sbjct 666 TGTCAGAGAAGTGGTTCACCCACGCCTCCCCCACTCTCTTCAACGCAGGAACCAACAGGC 725 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 | ||| || ||||| ||| | | |||||||| ||| ||||| ||||| |||| Sbjct 726 CTCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATTTATG 785 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG-CA 260074 ||||||| ||||||||||| ||||||||||| | || || || || || | || | || Sbjct 786 ACACGCTGAAGCAGTGCGCCCTCATCTCCAAATCAGCGGGAGGAATTGGCGTGGCTGTCA 845 Query 260075 ----CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGG 260130 || || | | |||| || ||| | || |||||||||||| | |||||||| Sbjct 846 GCTGCATCAGATCAAC----CGGGAGC-TACATCGCCGGCACCAACGGCAACTCCAACGG 900 Query 260131 CCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||| || |||||||| | |||| ||| ||||||| || |||||||||||| Sbjct 901 CCTAGTCCCCATGCTGAGAGTTTACAACAACACGGCACGTTACGTCGACCAG 952 Score = 89.7 bits (98), Expect = 7e-12 Identities = 97/127 (76%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 262103 GCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTC 262162 |||||| | | | |||| | || ||||| || || |||||| | ||||| |||||| | Sbjct 1262 GCCATTATTGAGTCCCAGACAGAAACCGGTACACCGTACATGCTGTACAAAGACGCCTGC 1321 Query 262163 AACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGC--CAACCTGTGCACCG 262220 ||| || |||||||||||||| |||||||||| || | || |||||| ||||| | Sbjct 1322 AACAGGAAGAGCAACCAGCAGAATCTGGGCACCA--TCAAATGCAGCAACCTCTGCACAG 1379 Query 262221 AGATCGT 262227 ||||||| Sbjct 1380 AGATCGT 1386 >seq124338 Length=5045 Score = 131 bits (144), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| |||||||| |||||| |||| |||| ||| |||| | ||| Sbjct 748 TACAAAGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCTATG 801 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| ||||| | || ||||||| | ||||| ||| Sbjct 802 GGCATCATGAACTCCTTTGTGGGGGACATCTTTGAGCGCATCGCCGGTGAGGCTTCCCGC 861 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||| || Sbjct 862 CTGGCCCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCCGT 921 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||| || || |||||||||| Sbjct 922 CTGCTGCTGCCCGGTGAGCTGGCCAAACACGCTGTGTCTGAGGGCACCA 970 >seq8668 Length=15884 Score = 98.7 bits (108), Expect = 1e-14 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| |||||||||||||| ||||| ||| || | || | |||| ||| || || Sbjct 12728 CCATGAGCATCATGAACTCGTTCGTCAATGACCTGTTTGAGAGAATCGCCACAGAAGCGT 12669 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || ||||| | | |||||| ||| ||| ||| || | ||| | |||||||| | Sbjct 12668 CCCGGCTGGCTCAGTACAACAAACGCGCCACCATCACCAGCAGGGAGGTGCAGACCGCAG 12609 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| | ||| ||| || ||||||| |||||||| || |||||||||| Sbjct 12608 TGAGGCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCTGAGGGCACCA 12555 >seq24207 Length=2658 Score = 93.3 bits (102), Expect = 6e-13 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 725007 GACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGC 725066 || ||||||| | ||||| ||||| || | || |||||||||| ||| ||| | Sbjct 2513 GAGCGCATCGCCGGTGAGGCTTCCCGCCTTGCCCACTACAACAAGCGCTCCACCATCACC 2454 Query 725067 ACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCC 725126 | | ||||||||||||||||| || ||| | ||| ||| || ||||||| |||||| Sbjct 2453 TCCAGGGAGATCCAGACCGCCGTCCGTCTGCTGTTGCCCGGTGAGCTGGCCAAACACGCC 2394 Query 725127 GTCTCCGAGGGCACCA 725142 || || |||||||||| Sbjct 2393 GTGTCTGAGGGCACCA 2378 >seq78611 Length=12060 Score = 87.8 bits (96), Expect = 3e-11 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 1813106 CGGTTAAAGCCGTGCCGCGTGACGGCCACCAC-TGAGCCGCGGCAACACATGGTGTCGGT 1813164 ||||| | |||||| || |||| ||||| || ||| ||||||||| |||||||||| Sbjct 1257 CGGTTGATGCCGTGACGTGTGATGGCCATCAGGTGA-CCGCGGCAAGTCATGGTGTCGCA 1315 Query 1813165 GGCCAGCGCAAAGTGGCGGTCGTTGACATAGGTGCCGTCAAAGGAGATCACG 1813216 ||| || ||||| |||| |||||| |||| |||||||||||||| ||| Sbjct 1316 AAGCAGAGCCAAGTGACGGTAGTTGACGTAGGAACCGTCAAAGGAGATGACG 1367 >seq44434 Length=8273 Score = 87.8 bits (96), Expect = 3e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 ||||| |||| | ||||||||| ||| | || | |||||||| ||||||| ||| | Sbjct 1389 TGCTCATGGCCCCCATGCCCACAGCCTCCACTGCCCAGATCCTCGGCAACAATGAGTCCA 1330 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTT 263046 | |||| | ||| |||||||||||||| ||| | |||||||| || || ||| Sbjct 1329 TTGAGGCCTACACCAGCAACATCTACACCCGCAGGGTGCTCTCAGGAGAGTTT 1277 Score = 86.0 bits (94), Expect = 9e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| ||| | ||| | | || | || |||||||| || |||||| ||||| Sbjct 2427 CAGCTGTGGTACGCCGTCATCGAGTCACAGACAGAAACCGGCACACCATACATGCTCTAC 2368 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAAC 262210 ||||||||| |||| | |||||||||||||| |||||||||| | | ||| Sbjct 2367 AAGGACGCCTGCAACAGAAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAAT 2308 Query 262211 CTGTGCACCGAGATCGT 262227 || ||||| |||||||| Sbjct 2307 CTATGCACAGAGATCGT 2291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7164977125532044