Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq97926 167 2e-36 seq85215 113 5e-20 >seq97926 Length=3727 Score = 167 bits (184), Expect = 2e-36 Identities = 899/1422 (63%), Gaps = 16/1422 (1%) Strand=Plus/Plus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| ||||||| ||||||||| || || || ||| || |||||||| || | || Sbjct 550 CTACCTGTTGAAGATCAACGGCAAAGTGGCCGAGCGACCGCAGCACATGCTCATGAGAGT 609 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 | |||| || || ||||| || | ||||| | ||| | || || ||| | || |||| Sbjct 610 GTCGGTCGGAATCCACGGAAAAAATATTGATGAAGCCATCGAGACCTACAACCTGCTGTC 669 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 ||| ||| || ||||| || ||||| | || ||| || || ||| |||||| Sbjct 670 AGAGAAGTGGTTCACCCACGCCTCCCCCACTCTCTTCAACGCAGGAACCAACAGGCCTCA 729 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 ||||| || || |||| ||||| || ||||||||||| |||||||| |||| Sbjct 730 GCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATTTATGACAC 789 Query 7764 GCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGA 7823 |||| | |||||| || ||||||| | || ||||| || || || | | Sbjct 790 GCTGAAGCAGTGCGCCCTCATCTCCAAATCAGCGGGAGGAATTGGCGTGGCTGTCAGCTG 849 Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 | | | | | ||| ||| ||||| ||||||||| || ||| ||| ||| || Sbjct 850 CATCAGATCAACCGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGCCTAGTCCC 909 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAA 7940 |||| || | || | ||| ||| ||| || | || |||||||| || ||| | Sbjct 910 CATGCTGAGAGTTTACAACAACACGGCACGTTACGTCGACCAGGGAGGCAACAAGAGACC 969 Query 7941 AGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGC-TAAATC 7999 || ||| ||||| || |||||||||||||| || | | | ||| | | | | Sbjct 970 CGGAGCCTTCGCCATGTACCTGGAGCCGTGGCACTTTGATGTGTTTG-AGTTCTTGGAGC 1028 Query 8000 TGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGC--GCGATCTATTCTTCGGATTGTG 8057 || |||| || || | ||||||| || | || || |||| ||| |||| Sbjct 1029 TGAAGAAAAACACAGGGAAGGAGG--AGCAAAGAGCCAGAGACCTTTTCTACGGCCTGTG 1086 Query 8058 GGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCC 8117 | | || || || || |||| | | || | | || | | ||||| || ||||| | Sbjct 1087 GATCCCGGACCTCTTCATGAAGAGAGTGGAAAGCAACCAAGACTGGTCTCTGATGTG-TC 1145 Query 8118 CGATCGTTGC-CCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAAC 8176 ||| || || ||| | | | | || | ||||| | |||| Sbjct 1146 CGAACGAGGCTCCTGGGCTGGATGAGTGCTGGGGGGAGGAGTTTGAGGCGCTCTACACCA 1205 Query 8177 AATACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCA 8236 |||| || | || ||| | | ||| ||||| || | | ||| | ||||| Sbjct 1206 AATATGAGAAGGAGGGCCGGGTCAAGCGTGTGGTGAAGGCTCAGCAACTGTGGCACGCCA 1265 Query 8237 TTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACG 8296 |||| || | || | |||||||||| ||||||||||||||||||||||| |||||| Sbjct 1266 TTATTGAGTCCCAGACAGAAACCGGTACACCGTACATGCTGTACAAAGACGCCTGCAACA 1325 Query 8297 CCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTG 8356 || ||||| || || |||||||||| |||||||| || ||| | || || | Sbjct 1326 GGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATGCAGCAACCTCTGCACAGAGATCG 1385 Query 8357 TACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACG 8416 | | |||| | |||||| ||||| || || ||||| ||||| | | | ||| Sbjct 1386 TTGAATACACCAGTGACGACGAGGTGGCGGTCTGTAATCTGGCGTCCATCGCTCTCAACA 1445 Query 8417 CGTTCGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAAG 8476 || || | | | | | || ||| |||||| || || || ||| ||| Sbjct 1446 TGTACG-TCACCCCTGAGCGGAC-CTT-TGACTTTAAAAAACTGGCCTACGTGACCAAAG 1502 Query 8477 TGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGC 8536 | | || || | | |||||||| |||| || || || || ||||| | Sbjct 1503 TAATCGTGAAAAACCTGAACAAGATCATTGACATCAACTTCTACCCAGTGCCCGAAGC-C 1561 Query 8537 GCGTA-TCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCG 8595 | | | || |||| ||| ||||| || | || | || || ||||| ||||| || || Sbjct 1562 GAGAAGTCCAACAAGCGTCACAGGCCAATCGGGATCGGTGTCCAAGGACTGGCGGATGCC 1621 Query 8596 TTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATA 8655 || | || |||| ||||| ||||||| || || | |||||||||| | || Sbjct 1622 TTCATCCTGATGCGTTACCCCTTTGAAAGCCCCGAGGCTCAGCTGCTCAACATCCAGATC 1681 Query 8656 GCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGC 8715 || || | || |||| | | || || ||||| | || ||||| || ||| Sbjct 1682 TTCGAGACCATCTACTACGCTTCCCTGGAGGCAAGCTGCGATCTGGCCCGCGAGCACGGC 1741 Query 8716 ACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGG 8775 | ||||| ||||| ||| |||| |||| || || | || || ||||||||| Sbjct 1742 GCCTACGAGACGTACCAAGGCTCTCCTGTCAGCAAGGGCATCCTCCAGTATGACATGTGG 1801 Query 8776 AATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTC 8835 | ||||| || ||||| | |||| |||| || || || || | Sbjct 1802 GAGAAGACGCCGACAGACCTGTGGGACTGGAAGCTGCTGAAGGAGAAGATCGCCAAACAC 1861 Query 8836 GGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATG 8895 || || | || |||||| |||| ||||| || || | || || || || || Sbjct 1862 GGCGTGAGGAACAGTCTGTTGATGGCCCCGATGCCGACAGCGTCCACCGCACAGATCCTG 1921 Query 8896 GGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 || |||||||| || | ||| | | ||||| |||| | ||| Sbjct 1922 GGCAACAACGAGTCTATCGAGGCCTACACCAGCAACATCTAC 1963 >seq85215 Length=7700 Score = 113 bits (124), Expect = 5e-20 Identities = 167/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 |||||||| | ||| |||| ||| || || || ||||| ||||| || |||||||||||| Sbjct 6883 TTTCCTCCACGGAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 6824 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | |||| | || || ||||| || || || || ||||| | |||||| || || Sbjct 6823 GAGAGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCAGGA 6764 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTC 134662 || ||||||||||| || || || ||| |||| || | |||| ||||| | || Sbjct 6763 GGGATGCCTTCTTTATCCTGGATCTTTGCCTTGA-CGTTTTCAATGGTGTCACTGGGCTC 6705 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || | ||| ||||| || || || | || || || || || |||||||| Sbjct 6704 GACCTCTAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATTTT 6651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504557783476240