Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq97926 493 2e-134 seq34237 111 2e-19 seq44434 105 9e-18 >seq97926 Length=3727 Score = 493 bits (546), Expect = 2e-134 Identities = 1282/1944 (66%), Gaps = 23/1944 (1%) Strand=Plus/Minus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || |||||| | || |||||| || || | || || || ||||| Sbjct 2058 TTCTTCATCTCCTCGCTCCACAGTCCTCGCTCCGTCAAGTCTTTGAGCAGGTGAGGATTG 1999 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || || || || || || | ||||| || ||||| || || ||||| || | || Sbjct 1998 ACGATCTGGAACTCTCCGGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 1939 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | ||| || || || ||||| || || || || || || || ||||| || |||| ||| Sbjct 1938 ATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGACGCTGTCGGCATCGGGGCCATCAAC 1879 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | ||| || || | || ||| | ||| || || || || | ||||| ||||| || Sbjct 1878 AGACTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 1819 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | || | ||| | || || || || || || || || || || || Sbjct 1818 TCTGTCGGCGTCTTCTCCCACATGTCATACTGGAGGATGCCCTTGCTGACAGGAGAGCCT 1759 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | || || || || | || | || || || || || |||||||| | | | || Sbjct 1758 TGGTACGTCTCGTAGGCGCCGTGCTCGCGGGCCAGATCGCAGCTTGCCTCCAGGGAAGCG 1699 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 || || || || ||||| |||| | ||||| || || || | || || || || Sbjct 1698 TAGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGG 1639 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 ||| | | || || || ||||| |||| ||| || || || || ||||| || || || Sbjct 1638 TAACGCATCAGGATGAAGGCATCCGCCAGTCCTTGGACACCGATCCCGATTGGCCTGTGA 1579 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | ||| || || | || ||||| || | || || | || || || || || || || Sbjct 1578 CGCTTGTTGGACTTCTCGGCTTCGGGCACTGGGTAGAAGTTGATGTCAATGATCTTGTTC 1519 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT---CGTCCA 69249 || ||| || | |||||| ||||| ||||| ||| ||||| || || Sbjct 1518 AGGTTTTTCACGATTACTTTGGTCACGTAGGCCAGTTTTTTAAAGTCAAAGGTCCGCTCA 1459 Query 69250 TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 | || |||| || || || | || || |||||||| || || ||||| | | Sbjct 1458 GGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCGTCGTCA 1399 Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369 | | |||| | |||||||| || || || || |||||||| || |||||||| ||| Sbjct 1398 CTGGTGTATTCAACGATCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGC 1339 Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429 || || ||||| |||| |||||||| ||||| || || |||| ||||| ||||| || Sbjct 1338 TGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCGGTTTCTGTC 1279 Query 69430 TGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTC 69489 || || || ||||| | | ||| | | ||| || | || |||| || | Sbjct 1278 TGGGACTCAATAATGGCGTGCCACAGTTGCTGAGCCTTCACCACACGCTTGACCCGGCCC 1219 Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 || || ||||||| || || ||| || || || || ||||| ||||||| ||| Sbjct 1218 TCCTTCTCATATTTGGTGTAGAGCGCCTCAAACTCCTCCCCCCAGCACTCATCCAGCCCA 1159 Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTA--ACTCGTTTCATAA 69607 ||| || || |||||||||| ||||| | | | | ||| |||| ||||| | Sbjct 1158 GGAGCCTCGTTCGGACACATCAGAGACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGA 1101 Query 69608 ATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 | || || || ||||| || | || ||| || ||||||| ||| | || || || ||| Sbjct 1100 AGAGGTCCGGGATCCACAGGCCGTAGAAA-AGGTCTCTGGCTCTTTGCTCCTCCTTCCCT 1042 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 || ||||| || || || | ||||| | | |||| | ||||| || || || || || Sbjct 1041 GTGTTTTTCTTCAGCTCCAAGAACTCAAACACATCAAAGTGCCACGGCTCCAGGTACATG 982 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | | |||| |||| || || |||||||| || | ||| | || ||||| || || Sbjct 981 GCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAA 922 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 ||||||||||| || | | || || || || || || || || | || || || || Sbjct 921 ACTCTCAGCATGGGGACTAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCG 862 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 ||| | || || | || | || |||||||| || ||| ||||| || || Sbjct 861 GTTGATCTGATGCAGCTGACAGCCACGCCAATTCCTCCCGCTGATTTGGAGATGAGGGCG 802 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || | |||| |||||||| || || || ||||| || || ||||| || || || Sbjct 801 CACTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAG 742 Query 69967 CAGCTAGACATTTGATG-ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGT 70025 ||||| |||| ||| | ||| | ||||| || || || | || || || ||||| || Sbjct 741 CAGCTGGACAGCTGAGGCCTGT-TGGTTCCTGCGTTGAAGAGAGTGGGGGAGGCGTGGGT 683 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATG 70085 |||||| || || || ||||| ||||| || || || ||| || |||| || Sbjct 682 GAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCTTCATCAATATTTTTTCCGTG 623 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 ||||| | || || | ||| | ||| ||||| ||||| || || ||| || || Sbjct 622 GATTCCGACCGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGAT 563 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 ||||||||||| || |||||||| || || ||||| ||||||| || || ||||| Sbjct 562 CTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCT 503 Query 70206 TTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACAGT 70265 ||| | || || | || || || || || | | | ||| || | | | || Sbjct 502 GTCGAAGATGATGGCGGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGT---TGAGCGT 446 Query 70266 ---AGGTGAGATAATCGGAGA---TCGTTTACCATTTTTAGGATTAACATAGTTGAATAA 70319 ||||| || || || ||||| ||| || || || |||||| ||| Sbjct 445 CTCCTTGGAGATCATGGGGGAGTGGCGTTT---ATTCAAGGGGTTGACGTAGTTGTATAG 389 Query 70320 ATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTAT 70379 ||| ||||| || ||||| || | ||| || || |||||||| | ||||| | ||| || Sbjct 388 ATCCTCCATCACGTCACTGAACACTTTCTTCGTCTCCTTGTGGAGGTTTGAGACGGCAAT 329 Query 70380 TCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGC 70439 | || || || || |||||||| || |||| || || || || || || ||||| Sbjct 328 CCGTGCAGCGAGGATGGCATAGTCGGGGTGTTTAGTTGTGAGCGTGGCGGCGATCTCCGC 269 Query 70440 AGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCAT 70499 |||| ||| || | || | || || || ||| | || | || ||||| || ||||| Sbjct 268 TGCTAGCGTGTCCAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGAATCACCTTCAT 209 Query 70500 GGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAATACG 70559 | || | | ||||| | || || | |||||| || || || | || || || Sbjct 208 CGTAATCTGGGCCGGATCCACAAAGTCGGAGTTCAGCCCGTAGCAGAGCTTCTGGATGCG 149 Query 70560 AGATGTAATTTTATCAAACATAAC 70583 ||| || |||||||| ||||| || Sbjct 148 AGAGGTGATTTTATCGAACATGAC 125 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| ||||| || || | |||| || |||| || || || || || | Sbjct 2630 TCCAGCCGTAGAAGTGCATGCTGGTCAATTTGCCGTAGTTTGGCTCTGCGATGTGGATGT 2571 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || |||||||| || ||||| || || | || || ||||| || | || ||| Sbjct 2570 TCAGGGACTGACTTTGGTCAATGAAGGCGCCACGGTCGGCGGCCATCTTGAGAACTGTCT 2511 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| ||||||||| | || ||| | | ||| || | ||||||||||| Sbjct 2510 TCTGAGAAATTTCCCAGACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 2460 >seq34237 Length=22483 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| | || || | || || || | ||||| ||||||||||| || | ||| | Sbjct 12738 CCTCATCCCGGCTGATCAGCTCATTGGAGTAGGTGAGGCCAGGCATTAGGCCTCTCTTCT 12797 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| | |||||||| || || ||||| |||||||||||||| ||||||||||| | Sbjct 12798 TTAGCCAGTAGATGGCAGCGAATGAGCCAGAGAAGAAGATGCCTTCCACTGCTGCAAAAG 12857 Query 39759 CAACAAGTCTCTCTCC 39774 | ||||||| ||| || Sbjct 12858 CCACAAGTCGCTCCCC 12873 >seq44434 Length=8273 Score = 105 bits (116), Expect = 9e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 |||||||| |||||||| || ||||||| || |||||||| ||||| || |||||| || Sbjct 2294 ATCTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTTCTG 2353 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGAT 69440 || |||||||||||||| || || | || || || ||||| |||| || ||||| Sbjct 2354 TTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTCTGTCTGTGACTCGAT 2409 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 || ||||||||||| || || | || || || || || ||||| | ||| |||| Sbjct 1712 TAGGTTTCATAAGGGCCGAGCTCAGCTGCCAGCTCGCAGCTGGCCTCCAGGGCAGCGTAG 1771 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 || || || || || |||| | ||||| || || || | || |||||||| ||| Sbjct 1772 TAGATGGTCTCAAAGATCTGGATGTTGAGCAGCTGGGCCTCCTGGCTTTCGAATGGGTAA 1831 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | | ||||||||| || || |||| ||||| || || || || || || || || | | Sbjct 1832 CGCATAAGAATAAAGGCGTCAGCCAGACCCTGCACTCCGATTCCAATTGGCCTGTGGCGC 1891 Query 69136 TTATTTGAACTTTCAGC 69152 || ||||| |||||||| Sbjct 1892 TTGTTTGACCTTTCAGC 1908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685766281765680