Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq56843 102 6e-17 seq106751 100 2e-16 seq106752 96.9 3e-15 seq34237 89.7 4e-13 seq56842 82.4 6e-11 >seq56843 Length=11493 Score = 102 bits (112), Expect = 6e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 87328 CCTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCA 87387 |||||||||| ||| || || ||| |||| || || || |||||| |||||| |||||| Sbjct 4587 CCTGCTCCCATTTTGCTGAAGTCTCTCTTTGACTGGAAGGTATAGGCTGTCAGTCCAGCA 4528 Query 87388 AACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCAAA 87447 ||||||||||| || | || | | ||| || | |||||||| ||||||||||||| Sbjct 4527 AACACAGCACAGGTCAGGAACAAGGCTTGCAGCACAGTGGAGTACTCATAGAAGGTCACT 4468 Query 87448 GTTG 87451 |||| Sbjct 4467 GTTG 4464 >seq106751 Length=3641 Score = 100 bits (110), Expect = 2e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTT-GA 77369 |||||| ||||||| ||| || |||| ||||||||||| |||||| || ||||| | Sbjct 2664 CCAGACCACCTCCACCTCTGCGTTCAGTTTGTCCAGCTTCACAAAGTCTTCTTTGTTGGT 2723 Query 77370 CAACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 | |||| |||||| | |||||||||||||||| |||||||||| || ||||| | | Sbjct 2724 GATCTGA-CCTCCGGACTTCAGCCTCCAGCCGTTCAGCTTCCAGTTTTTCACCCAGCTGG 2782 Query 77430 TCACACC 77436 | ||||| Sbjct 2783 TGACACC 2789 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 77433 CACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCT 77492 ||||||||||||||||| ||||||||||||||| |||| |||||| || || ||||| | Sbjct 3042 CACCATTGATGGTGAACTTGCTGTCTGTGTAGAGAACCAACTTCTTTATGTTCTTCTCTT 3101 Query 77493 GAGCTTGTTGCAGTGCTTTGGATGCAGCCTGG 77524 ||||||| ||| || || | || |||||| Sbjct 3102 TGGCTTGTTCCAGCGCCCTGCAGGCTGCCTGG 3133 >seq106752 Length=5634 Score = 96.9 bits (106), Expect = 3e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 77862 CTTCTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTG 77921 || ||||||| || ||||||||||||| ||||| |||||||||||| || ||| | || Sbjct 1549 CTCCTCTGACGAAGGCCCAGGCATCTTTCTCTGATGCAAACTTCTTGAAAGAGGCAGATG 1608 Query 77922 GGAATTTGTCTACTTGGCTCTTACATTCATCCC 77954 |||||||||| || || ||||||| ||||||| Sbjct 1609 GGAATTTGTCCACCTGCTTCTTACACTCATCCC 1641 >seq34237 Length=22483 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || || |||||||| || ||||||| ||||||||||| ||||| || || || || || Sbjct 12873 GGGGAGCGACTTGTGGCTTTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGCTCATTCGCT 12814 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||| | ||| ||||||| |||| | |||||||| | || | || |||||| | Sbjct 12813 GCCATCTACTGGCTAAAGAAGAGAGGCCTAATGCCTGGCCTCACCTACTCCAATGAGCTG 12754 Query 44243 ATAAGTCGTGATGA 44256 || || || ||||| Sbjct 12753 ATCAGCCGGGATGA 12740 >seq56842 Length=8166 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 87696 CATCCGTATCTTGATATTAGCTGTAGCAACATTTGTGCCATAGTTAAAATCATCTTCTAC 87755 ||| ||||||| || | | |||||||||||||||||||||||||||||||| ||||| | Sbjct 420 CATACGTATCTGGACACTGGCTGTAGCAACATTTGTGCCATAGTTAAAATCGTCTTCAAT 361 Query 87756 TAAAGATTGCGAGTGCTTTTCACTTGTCATTGT 87788 | |||| | || |||||||| |||| || Sbjct 360 TGAAGACCTGGGGTATTTTTCACTACTCATCGT 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396811448337310