Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq97926 208 1e-48 seq44434 91.5 2e-13 >seq97926 Length=3727 Score = 208 bits (230), Expect = 1e-48 Identities = 962/1499 (64%), Gaps = 58/1499 (4%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || || | | | ||| |||| ||||| ||||| Sbjct 2056 CTTCATCTCCTCGCTCCACAGTCCTCGCTCCGTCAAGTCTTTGAGCAGGTGAGGATTGAC 1997 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || ||||| || | |||| ||| | ||||||||| | ||||| | || | Sbjct 1996 GATCTGGAACTCTCCGGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGAT 1937 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | || || || |||| ||| ||||||||||| ||||| ||||| || |||||||| || Sbjct 1936 AGACTCGTTGTTGCCCAGGATCTGTGCGGTGGACGCTGTCGGCATCGGGGCCATCAACAG 1877 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA--GTTG 110851 |||||| | | || | | ||| ||||| || | | |||||| | | | Sbjct 1876 ACTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 1817 Query 110852 AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGGAGAAC 110909 | | || || || ||||||||||| |||| || | |||||| ||| ||||| | Sbjct 1816 TG-TCGGCGTCTTCT-CCCACATGTCATACTGGAGGATGCCCTTGCTGACA--GGAGAGC 1761 Query 110910 CCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 110969 | | | || || |||| || || | |||| || ||||| ||||||||||| | Sbjct 1760 CTTGGTACGTCTCGTAGGCGCCGTGCTCGCGGGCCAGATCGCAGCTTGCCTCCAGGGAAG 1701 Query 110970 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 111029 ||| || ||||| || ||||| | || | | || || || ||||| | Sbjct 1700 CGTAGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTCAAAGG 1641 Query 111030 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 ||| || || || || ||||||| || ||||| ||||| | || || || |||| Sbjct 1640 GGTAACGCATCAGGATGAAGGCATCCGCCAGTCCTTGGACACCGATCCCGATTGGCCTGT 1581 Query 111090 GTCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGG 111148 | ||| | || ||||| | || || || || || || || ||||||||| | Sbjct 1580 GACGCTTGTTGGACTT-CTCGGCTTCGGGCACTGGGTAGAAGTTGATGTCAATGATCTTG 1522 Query 111149 TTTAGATTTTTGGTAACAAT--CTTTG-TGATTTCATGAAGTTTTTCATAATCAAAAGTG 111205 || || ||||| || || ||||| | | | ||||||| | | ||||| || Sbjct 1521 TTCAGGTTTTTC---ACGATTACTTTGGTCACGTAGGCCAGTTTTTTAAAGTCAAAGGTC 1465 Query 111206 CGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTC 111265 || ||| |||| ||| | || ||||| || |||| ||| || || ||| | Sbjct 1464 CG---CTCAGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACC 1408 Query 111266 TCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCC 111325 || || | | ||||| || | || ||||| || | |||| | || || || ||| Sbjct 1407 TCGTCGTCACTGGTGTATTCAACGATCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCC 1348 Query 111326 AAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCC 111385 | ||||| ||||| |||||| ||||||| || || ||||| |||||||| || || || Sbjct 1347 AGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCG 1288 Query 111386 GTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTT 111444 || || ||||| || | | ||| || | ||| | | | | | || || || || Sbjct 1287 GTTTCTGTCTGGGACTCAATAATGGCGTGCCACAGTTGCTGAGCCTTCACCACACGC-TT 1229 Query 111445 GGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GT 111503 | |||| |||||| ||| || || |||||||| || ||||||||||| ||| | || | Sbjct 1228 GACCCGGCCCTCCTTCTCATATTTGGTGTAGAGCGCCTCAAACTCCTC-CCCCCAGCACT 1170 Query 111504 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCTTCCTCAA 111560 | || || || |||| || ||||| | |||||||| ||| | |||| | Sbjct 1169 CATCCAGCCCAGGAGCCTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---A 1113 Query 111561 CCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCT 111620 | | ||||||||| ||||| || ||||||||| | || || ||||| | || Sbjct 1112 CTCTCTTCATGAAGAGGTCCGGGATCCACAGGCCGTAGAAAAGGTCTCTGGCTCTTTGCT 1053 Query 111621 CTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGC 111679 | || | ||| ||| || | | ||| | |||||| | | ||| |||||| ||| Sbjct 1052 CCTCCTTCCCTGTGTT-TTTCTTCAGCTCCAAGAACTCAAACACATCAAAGTGCCACGGC 994 Query 111680 TCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGC 111735 || || || | |||| | ||| || | | | || | || | || || || || Sbjct 993 TCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTG-CCTCCCTGGTCGACGTAACGTGC 935 Query 111736 TGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCG 111795 ||| ||| | || | ||||| || | | || | || | || || || || Sbjct 934 CGTGTTGTTGTAAACTCTCAGCATGGGGACTAGGCCGTTGGAGTTGCCGTTGGTGCC--- 878 Query 111796 AATACGAGATTTATTGGCTC-----TCACATCATGGATGTG-----CATCCCAATACCCC 111845 | ||| || |||| | | | ||| | || || ||||| || | Sbjct 877 ----GGCGATGTA---GCTCCCGGTTGATCTGATGCAGCTGACAGCCACGCCAATTCCTC 825 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 | || | || ||||| | || |||| | | || || |||| || || | ||| || Sbjct 824 CCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGT 765 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 | ||||| |||||| |||||||| ||||||| ||| || || || || || |||| Sbjct 764 CGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGA 705 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAG 112024 |||| || || | ||||| ||||| || | | |||| | || ||| ||||| | | Sbjct 704 AGAGAGTGGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGTAGGTCTCGATG 646 Query 112025 ACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | |||||| | || |||||||| |||| | || | ||||| ||||| ||| || Sbjct 645 GCTTCATCAATATTTTTTCCGTGGATTCCGACCGACACTCTCATGAGCATGTGCTGCGG 587 >seq44434 Length=8273 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 111277 TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 111336 ||||||||||| || ||||| |||| ||| || || || |||| ||||| || Sbjct 2281 TGTGTACTCTACGATCTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTG 2340 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| ||||| ||||||| || ||||||||||||||||| || || || || || ||||| Sbjct 2341 GTTGCTCTTTCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTCTGTCTG 2400 Query 111397 TGA 111399 ||| Sbjct 2401 TGA 2403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626987410075200