Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq97926 176 6e-39 seq44434 98.7 1e-15 seq123332 91.5 2e-13 >seq97926 Length=3727 Score = 176 bits (194), Expect = 6e-39 Identities = 890/1396 (64%), Gaps = 38/1396 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | |||| ||||| |||| ||| || || ||||| Sbjct 1962 TAGATGTTGCTGGTGTAGGCCTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAC 1903 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 ||||| ||||| || ||||| | || ||||| | | || | || || ||| Sbjct 1902 GCTGTCGGCATCGGGGCCATCAACAGACTGTTCCTCACGCCGTGTTTGGCGATCTTCTCC 1843 Query 118302 TTGAG-AGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGC---CACATATCAAACTG 118357 || || ||| ||| |||| | || | |||| | || | ||||| ||| |||| Sbjct 1842 TTCAGCAGCTTCC-AGTCCCAC---AGGTCTGTCGGCGTCTTCTCCCACATGTCATACTG 1787 Query 118358 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 118417 |||||| || | | | || || || | | ||||| || | ||| | | || Sbjct 1786 GAGGATGCCCTTGCTGACAGGAGAGCCTTGGTACGTCTCGTAGGCGCCGTGCTCGCGGGC 1727 Query 118418 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT 118477 || ||| |||| ||||| |||| |||| || || || || || || | || | Sbjct 1726 CAGATCGCAGCTTGCCTCCAGGGAAGCGTAGTAGATGGTCTCGAAGATCTGGATGTTGAG 1667 Query 118478 TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACC 118537 || |||||| | ||||| | | || || || || ||||||| || || Sbjct 1666 CAGCTGAGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCCGCCAGTCC 1607 Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CAC 118594 ||||||||||| || ||||| | || | | | || |||||| ||| || ||| Sbjct 1606 TTGGACACCGATCCCGATTGGCCTGTGACGCTTGTTGGACTTCT---CGGCTTCGGGCAC 1550 Query 118595 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 118654 || || || || | || || | | | || || ||||| || || || || | | Sbjct 1549 TGGGTAGAAGTTGATGTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACGTA 1490 Query 118655 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 118714 || |||| | ||||| | || ||| |||| ||| | || ||||| Sbjct 1489 GGCCAGTTTTTTAAAGTCAAAGGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGAT 1433 Query 118715 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCA 118774 |||||||||||||| || | ||| || | | ||||| || | || || ||||| Sbjct 1432 GGACGCCAGATTACAGACCGCCACCTCGTCGTCACTGGTGTATTCAACGATCTCTGTGCA 1373 Query 118775 CAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 118834 | ||| | || |||||||||| |||| || || ||| |||| || || || Sbjct 1372 GAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTC 1313 Query 118835 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 118894 ||||| |||||||| || || || || || || ||||||| | ||| || | ||| | Sbjct 1312 TTTGTACAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCGTGCCACAG 1253 Query 118895 ATCGGCAGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGG 118953 | ||| || || || ||| | || ||||| | ||| || || |||||||| | Sbjct 1252 TTGCTGAGCCTTCACCACACGC-TTGACCCGGCCCTCCTTCTCATATTTGGTGTAGAGCG 1194 Query 118954 CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAG 119013 | |||||||| || ||| | ||| ||||| || |||| | || || | |||| Sbjct 1193 CCTCAAACTCCTCCCCCCAGCACTCATCCAGCCCAGGAGCCTCGTTCGGACACATCAGAG 1134 Query 119014 ACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 |||| ||| | ||| || | ||||||||||||||| |||||||| || |||| Sbjct 1133 ACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAAGAGGTCCGGGATCCACAG-GCCG 1078 Query 119071 -AGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 |||| || || | | | ||| || | |||| || || || |||||| || Sbjct 1077 TAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTCCCTGTG-TTTTTCTTCAGCTCCAAGAA 1019 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGAC 119184 || | | ||| ||||||||| |||||||||| |||| | || || | Sbjct 1018 CTCAAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTT 959 Query 119185 GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244 | || |||||| || || | || ||| ||| | || | ||||| || | | | Sbjct 958 G-CCTCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAGGC 900 Query 119245 CATCGGATTGGCCATTTGT-CCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATG 119303 | | ||| | ||| || || || ||| | | || | ||||| | || Sbjct 899 CGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTT-GATCTGATGCAGCTGACA 841 Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363 || ||||| || || || | || ||||| | ||||||| | | || || | || Sbjct 840 GCCACGCCAATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAA 781 Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423 || || ||||| ||| |||| | |||| ||||||||||| |||| ||||||||| Sbjct 780 ATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTG 721 Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTT 119482 || || |||||||||||||| || | |||||| ||||| || | | |||| | Sbjct 720 TTGGTTCCTGCGTTGAAGAGAGTGGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAG 662 Query 119483 GTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 119542 || ||||||||| | | | | ||| | || ||||| || |||| ||| || | ||| Sbjct 661 GTTGTAGGTCTCGATGGCTTCATCAATATTTTTTCCGTGGATTCCGACCGACACTCTCAT 602 Query 119543 AAACATGTATTGGGGT 119558 | ||||| || ||| Sbjct 601 GAGCATGTGCTGCGGT 586 >seq44434 Length=8273 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||||| | |||||||||| || | ||| ||||| |||||| Sbjct 1305 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCATTGTTGCCGAGGATCTGGGCAGTGGAG 1364 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||||||||||| |||||||| || ||||| Sbjct 1365 GCTGTGGGCATGGGGGCCATGAGCAGACTGTT 1396 >seq123332 Length=1279 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 981 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1040 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| || ||| || || |||||||||||||| ||||||||| ||||| | Sbjct 1041 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 1100 Query 130155 CAAAGAGACGCTC 130167 | | | |||||| Sbjct 1101 CCACCACACGCTC 1113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617406572192720