Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq97926 192 7e-44 seq123332 89.7 6e-13 seq44434 82.4 9e-11 seq34237 82.4 9e-11 >seq97926 Length=3727 Score = 192 bits (212), Expect = 7e-44 Identities = 922/1442 (64%), Gaps = 54/1442 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||| | ||| | |||| || || || || | |||||| | | Sbjct 587 CCGCAGCACATGCTCATGAGAGTGTCGGTCGGAATCCACGGAAAAAATATTGATGAAGCC 646 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || | |||| | | || ||||| ||||| | || || ||||| Sbjct 647 ATCGAGACCTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCCCCCACTCTCTT 705 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || || || ||||||| |||||||| |||||| ||||| || Sbjct 706 CAACGCAGGAACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGA 765 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | || || |||| || || | | |||| || | ||||| || | || || Sbjct 766 CAGCATCGAAGGCATTTATGACACGCTGAAGCAGTGCGCCCTCATCTCCAAATCAGCGGG 825 Query 104461 GGGTATTGGGATG-----CACATCCATGATGTGA-----GAGCCAATAAATCTCGTATTC 104510 || ||||| || || | ||| | | | |||| || ||| | Sbjct 826 AGGAATTGGCGTGGCTGTCAGCTGCATCAGATCAACCGGGAGC---TACATCGCC----- 877 Query 104511 GGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 104570 || || || || | || | || | | || ||||| | || | ||| ||| | Sbjct 878 --GGCACCAACGGCAACTCCAACGGCCTAGTCCCCATGCTGAGAGTTTACAACAACACGG 935 Query 104571 CGCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAG 104626 | || || || | || | || | | | || ||| | |||| | || || ||| Sbjct 936 CACGTTACGTCGACCAGGGAGG-CAACAAGAGACCCGGAGCCTTCGCCATGTACCTGGAG 994 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG 104686 || |||||| ||| | | |||||| | ||| || ||| ||| | |||||| Sbjct 995 CCGTGGCACTTTGATGTGTTTGAGTTCTTGGAGCTGAAGAAAAACACAGGGAAGGAGGAG 1054 Query 104687 GCGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 104745 | | ||| | || || |||| || || ||||| || || ||||||||||||||||| Sbjct 1055 -CAAAGAGCCAGAGACCTTTTCTACGGCCTGTGGATCCCGGACCTCTTCATGAAGAGAGT 1113 Query 104746 TGAGGAGAGTGGCAAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA 104802 ||| || | | |||||||| | ||||| || |||| ||||| || || Sbjct 1114 ---GGAAAGCAACCAAGACTGGTCTCTGATGTGTCCGAACGAGGCTCCTGGGCTGGATGA 1170 Query 104803 -TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGA 104861 ||| | ||| ||||||||||| || || ||||| || || ||| | || || |||| | Sbjct 1171 GTGCTGGGGG-GAGGAGTTTGAGGCGCTCTACACCAAATATGAGAAGGAGGGCCGGGTCA 1229 Query 104862 CTGCGAC-GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 104920 ||| |||| ||| | ||||| | || ||| | |||| || || || || Sbjct 1230 A-GCGTGTGGTGAAGGCTCAGCAACTGTGGCACGCCATTATTGAGTCCCAGACAGAAACC 1288 Query 104921 GGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTG 104980 |||||||| |||||||| |||||||||||||| ||| ||||| || || ||||| || Sbjct 1289 GGTACACCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTG 1348 Query 104981 GGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 || ||||| | ||| ||||| ||||| ||| | |||| || | || ||| Sbjct 1349 GGCACCATCAAATGCAGCAACCTCTGCACAGAGATCGTTGAATACACCAGTGACGACGAG 1408 Query 105041 ACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG 105100 ||| || ||||| || || || ||||||||| || ||| || || ||| | Sbjct 1409 GTGGCGGTCTGTAATCTGGCGTCCATCGCTCTCAACATGTACGTCACCCCTGAG---CGG 1465 Query 105101 ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGA 105160 || ||||| | | ||||||| | | || || ||| || |||||||| |||| Sbjct 1466 ACCTTTGACTTTAAAAAACTGGCCTACGTGACCAAAGTAATCGTGAAAAACCTGAACAAG 1525 Query 105161 GTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220 | ||||| | || || ||||| || || || || || | | | ||| | Sbjct 1526 ATCATTGACATCAACTTCTACCCAGTGCCCGAAGCCGAGAAGTCCAACAAGCGTCACAGG 1585 Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT 105280 ||||| || ||||||| || || || ||||||| ||||| || || || | ||| Sbjct 1586 CCAATCGGGATCGGTGTCCAAGGACTGGCGGATGCCTTCATCCTGATGCGTTACCCCTTT 1645 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 || | ||| || || |||| | || || |||||||| || |||| | Sbjct 1646 GAAAGCCCCGAGGCTCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACTACGCTTCC 1705 Query 105341 CTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400 || ||||| || | || |||| | | || | || || || | | || ||| Sbjct 1706 CTGGAGGCAAGCTGCGATCTGGCCCGCGAGCACGGCGCCTACGAGACGTACCAAGGCTCT 1765 Query 105401 CCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGG--GAAGGTG-AGACCAAGCTTC 105455 || | ||| |||||| | || || | ||| |||||| |||| | ||| | || Sbjct 1766 CCTG--TCAGCAAGGGCATCCTCCAGTATGACATGTGGGAGAAGACGCCGACAGACCT-- 1821 Query 105456 ACTACGACTGGGAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTC 105514 | |||| ||||||| || ||||| ||| | | || | | |||||||| Sbjct 1822 -GTGGGACT-GGAAGCTGCTGAAGGAGAAGATCGCCAAACACGGCGTGAGGAACAGTCTG 1879 Query 105515 CTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 105574 | ||||| || ||||| ||||| ||||||||||| ||| |||| || || || | | Sbjct 1880 TTGATGGCCCCGATGCCGACAGCGTCCACCGCACAGATCCTGGGCAACAACGAGTCTATC 1939 Query 105575 GAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 105634 || ||||||| | |||||||| | ||| |||| | |||||||| ||| ||| Sbjct 1940 GAGGCCTACACCAGCAACATCTACACCCGCAGAGTCCTCTCCGGAGAGTTCCAGATCGTC 1999 Query 105635 AA 105636 || Sbjct 2000 AA 2001 >seq123332 Length=1279 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 ||| ||||| ||||||||||||||||||||| || || | ||||| |||||| |||| Sbjct 1090 TGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGCTGAAGAAGAGAGG 1031 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || ||||| || || ||||||||||||||| ||| Sbjct 1030 CCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATC 994 >seq44434 Length=8273 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104901 TCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAA 104960 || |||| || || || || || |||||||||||||| ||||| |||||||| ||| || Sbjct 2408 TCGAGTCACAGACAGAAACCGGCACACCATACATGCTCTACAAGGACGCCTGCAACAGAA 2349 Query 104961 AGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGG 105020 |||| || || ||||| |||| ||||| |||||| || ||||| ||| | | Sbjct 2348 AGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTATGCACAGAGATCGTAG 2289 Query 105021 AATTTACAGACAAAGATGAG 105040 | | ||| |||||| ||| Sbjct 2288 AGTACACAAGCAAAGACGAG 2269 >seq34237 Length=22483 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 |||||||| | || ||||| || || || |||||||||||||| || ||| || Sbjct 12870 GAGCGACTTGTGGCTTTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGCTCATTCGCTGCC 12811 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || || ||||| |||||| |||| || ||||| || ||| || |||||| ||||| ||| Sbjct 12810 ATCTACTGGCTAAAGAAGAGAGGCCTAATGCCTGGCCTCACCTACTCCAATGAGCTGATC 12751 Query 94924 TCTCGTGACGAGG 94936 || || |||| Sbjct 12750 AGCCGGGATGAGG 12738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582290676892880