Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq97926 325 4e-84 seq34237 105 7e-18 seq123332 100 3e-16 seq44434 87.8 2e-12 seq98823 84.2 2e-11 seq98821 84.2 2e-11 >seq97926 Length=3727 Score = 325 bits (360), Expect = 4e-84 Identities = 902/1366 (66%), Gaps = 59/1366 (4%) Strand=Plus/Minus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| |||| ||| | ||| |||||||||| | ||||| | ||||| || ||| Sbjct 1990 GAACTCTCCGGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATAGACTC 1931 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 |||||| |||| |||||| ||||| || || |||||||| || || | || ||| || Sbjct 1930 GTTGTTGCCCAGGATCTGTGCGGTGGACGCTGTCGGCATCGGGGCCATCAACAGACTGTT 1871 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGC 78680 || | || || | ||||| |||| || | |||||| | || ||| Sbjct 1870 CCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCTGTCGG 1811 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGT 78740 || || |||||||||| || ||||| |||| | | || || || | | |||| Sbjct 1810 CGTCTTCTCCCACATGTCATACTGGAGGATGCCCTTGCTGACAGGAGAGCCTTGGTACGT 1751 Query 78741 CTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCA---TGACTCGAGCAGGGCCGCGTGGTA 78797 |||||| | || | ||| ||| || ||||| || ||| ||||| |||| ||| Sbjct 1750 CTCGTAGGCGCCGTGCTCGCGGGCCAGATCGCAGCTTGCCTC---CAGGGAAGCGTAGTA 1694 Query 78798 CACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGA--AAGG 78855 | | ||||||||| |||||||| | |||| || || || | || | Sbjct 1693 GATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGGTAACG 1634 Query 78856 CCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGC 78915 | | || |||||| |||| ||||| || ||||| ||||| |||| || | ||| ||| Sbjct 1633 C--ATCAGGATGAAGGCATCCGCCAGTCCTTGGACACCGATCCCGATTGGCCTGTGACGC 1576 Query 78916 ATGTTGCTCTT-TCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTT 78971 ||||| ||| |||| | |||| | ||||| ||||| || |||| ||| Sbjct 1575 TTGTTGGACTTCTCGG----CTTCGGGCACTGGGTAGAAGTTGATGTCAATGATCTTGTT 1520 Query 78972 CAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCC 79031 |||||| | || || ||||| | | || ||| || ||||| ||| Sbjct 1519 CAGGTTTTTCACGATTACTTTGGTCACGTAGGCCAGTTTTTTAAAGTCAAAGG----TCC 1464 Query 79032 TTTGATGAAAGTCG-----GTAGGCACAGCGATG----CCAGGTTGCACACGGCCGTCTC 79082 | | | | || || | | ||||||| |||| || || || ||| ||| Sbjct 1463 GCTCAGGGGTGACGTACATGTTG--AGAGCGATGGACGCCAGATTACAGACCGCCACCTC 1406 Query 79083 GTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGAT 79142 ||| || | || | ||| |||||||| | || | ||||||||||| | Sbjct 1405 GTCGTCACTGGTGTATTCAACGATCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAG 1346 Query 79143 GTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGT 79202 |||| ||||||||||||| ||| |||||||| ||||| ||||||||| || ||||| Sbjct 1345 ATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCGGT 1286 Query 79203 CTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTA 79262 || ||| || | || | ||| ||| | | | | ||| || || |||| Sbjct 1285 TTCTGTCTGGGACTCAATAATGGCGTGCCACAGTTGCTGAGCCTTCACCACACGCTTGAC 1226 Query 79263 CCGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGG 79322 ||| |||| | || | ||| | | | | || ||||||| || || Sbjct 1225 CCGGCCCTCCTTCTCATATTTGGTGTAGAGCGCCTCAAACTCCTCCCCCCAGCACTCATC 1166 Query 79323 CAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTC 79382 ||| || || ||||| ||| |||||||| |||||| | || | || || ||| Sbjct 1165 CAGCCCAGGAGCCTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTT 1106 Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCTCGT 79441 ||||||||||||||||||||||||| |||| ||| ||||| | | | |||||| | Sbjct 1105 CATGAAGAGGTCCGGGATCCACAGG-CCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCT 1047 Query 79442 CGCCCTG-GTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGA 79500 ||||| ||| |||||| | || || | | || ||||||||||||||| Sbjct 1046 T-CCCTGTGTTTTTCTTCAGCTCCAAGAACTCAAACACATCAAAGTGCCACGGCTCCAGG 988 Query 79501 TAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTG 79560 || |||||||| | || | |||| ||| ||||||| |||||| || ||||||||| Sbjct 987 TACATGGCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTAACGTGCCGTGTTG 928 Query 79561 TTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGT 79620 ||| |||||| |||||||| || | ||||| || | |||||| || ||| ||| Sbjct 927 TTGTAAACTCTCAGCATGGGGACTAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGAT---- 872 Query 79621 GTACCGCTCGCCCGAATGTTC-GA-GCAGTGGATT------CCGATGCCCCCGGACCACT 79672 ||| |||| ||| || || || |||| || || || || || | | | Sbjct 871 GTA--GCTC--CCGGTTGATCTGATGCAGCTGACAGCCACGCCAATTCCTCCCGCTGATT 816 Query 79673 TGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCA 79732 |||||||| | ||||||| ||| ||||| || || ||||| ||||| ||||||||||| Sbjct 815 TGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCA 756 Query 79733 TAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCG 79792 | |||| |||||||||||| |||| ||| || |||| || || ||||||||||| || | Sbjct 755 TGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGAAGAGAGTGG 696 Query 79793 GCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838 | | ||||| ||||| |||| | || ||| | ||| ||||| Sbjct 695 GGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTC 650 Score = 259 bits (286), Expect = 5e-64 Identities = 862/1328 (65%), Gaps = 35/1328 (3%) Strand=Plus/Plus Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 |||||| ||| ||||| || |||||| ||||| ||||| | || || || ||||| Sbjct 649 CGAGACCTACAACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCCCCCACTCTCTTCAA 708 Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 ||| || || |||| || ||| |||| ||||| ||||| | || |||||||| ||||| Sbjct 709 CGCAGGAACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAG 768 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 ||| || ||||| || || ||||| ||| ||||||| | ||||||||| | | || || Sbjct 769 CATCGAAGGCATTTATGACACGCTGAAGCAGTGCGCCCTCATCTCCAAATCAGCGGGAGG 828 Query 19345 TATCGGGATCCACTGCTCGAAT--ATCCGGTCGAGTGGTACACGAATCAATGGGACGAAC 19402 || || | ||| || | ||| | || | || | ||| || || ||| Sbjct 829 AATTGGCGTGG-CTG-TCAGCTGCATCAGATCAACCGGGAGCTACATCGCCGGCACCAAC 886 Query 19403 GGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTC 19462 || || |||| | ||||| ||||| | || | |||||||||||| | |||||| Sbjct 887 GGCAACTCCAACGGCCTAGTCCCCATGCTGAGAGTTTACAACAACACGGCACGTTACGTC 946 Query 19463 AACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCG 19522 ||||||| ||| ||| | || | |||||||| ||||| ||||| |||||| Sbjct 947 GACCAGGGAGGCAACAAGAGACCCGGAGCCTTCGCCATGTACCTGGAGCCGTGGCACTTT 1006 Query 19523 GACGTCATGGATTTCCTCGAACTGCGCCTGAAC-CAGGGTGACGAGGAG--ATGCGCTGT 19579 || || | || ||| | || ||| ||| ||||| | |||||| | | || Sbjct 1007 GATGTGTTTGAGTTCTTGGAGCTGAAGAAAAACACAGGG-AAGGAGGAGCAAAGAGC--C 1063 Query 19580 CGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGA 19638 | ||||| ||| |||||| ||||||| |||||||| |||||| ||| || || | | Sbjct 1064 AGAGACCTTTTCTACGGCC-TGTGGATCCCGGACCTCTTCATGAAGAGAGTGGAAAGCAA 1122 Query 19639 CGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698 | |||| ||| |||||||| ||| |||| ||||| || || || || || Sbjct 1123 CCAAGACTGGTCTCTGATGTGTCCGAACGAGGCTCCTGGGCTGGATGAGTGCTGGGGGGA 1182 Query 19699 GGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCG 19758 || ||| | | | | ||| | || | |||||||| ||||| ||||| Sbjct 1183 GGAGTTTGAGGCGCTCTACACCAAATATGAGAAGGAGGGCCGGGTCAAGCGTGTGGTGAA 1242 Query 19759 GGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACAT 19818 ||| | | | | ||| || | | | | |||| || ||||| ||||||||||| Sbjct 1243 GGCTCAGCAACTGTGGCACGCCATTATTGAGTCCCAGACAGAAACCGGTACACCGTACAT 1302 Query 19819 GTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTC 19878 | ||||| |||||| ||| ||| || ||| |||| | ||| | ||||| | Sbjct 1303 GCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATG 1362 Query 19879 GTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAA 19938 |||||| || || || ||| | || ||| |||||| || || ||||| Sbjct 1363 CAGCAACCTCTGCACAGAGATCGTTGAATACACCAGTGACGACGAGGTGGCGGTCTGTAA 1422 Query 19939 TCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCT-------CCTTCGACTTTG 19991 |||||||||| | || | | ||||| | ||| |||| |||||| Sbjct 1423 TCTGGCGTCCATCGCTCTCAACATGTACGTCA----CCCCTGAGCGGACCTTTGACTTTA 1478 Query 19992 CCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGA 20051 ||| || | | |||||| || || | || ||||| |||| || | Sbjct 1479 AAAAACTGGCCTACGTGACCAAAGTAATCGTGAAAAACCTGAACAAGATCATTGACATCA 1538 Query 20052 ACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGA 20108 |||| ||||| | |||| || | | ||||| || | ||| ||| |||| |||| || Sbjct 1539 ACTTCTACCCAGTGCCCGAAGCCGAG---AAGTCCAACAAGCGTCACAGGCCAATCGGGA 1595 Query 20109 TCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCA 20168 |||| ||||| || ||||| || | ||||| || | | | | || || ||| Sbjct 1596 TCGGTGTCCAAGGACTGGCGGATGCCTTCATCCTGATGCGTTACCCCTTTGAAAGCCCCG 1655 Query 20169 AGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAAT 20228 |||| | |||||||| ||||||||| || | ||| |||| |||| || | Sbjct 1656 AGGCTCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACTACGCTTCCCTGGAGGCAA 1715 Query 20229 CGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCG 20288 ||||| || ||| ||| ||||| | |||||||||| | | || || || | | Sbjct 1716 GCTGCGATCTGGCCCGCGAGCACGGCGCCTACGAGACGTACCAAGGCTCTCCTGTCAGCA 1775 Query 20289 AGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGGAGC-----GC 20343 |||| ||||||||| |||||||||| || || || | ||| | || Sbjct 1776 AGGGCATCCTCCAGTATGACATGTGGGAGAAGACGCCGACAGACCTGTGGGACTGGAAGC 1835 Query 20344 -CCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGC 20402 || |||| ||||| | ||||| | | ||| || | | || || |||| Sbjct 1836 TGCTGAAGGAGAAGATCGCCAAACACGGCGTGAGGAACAGTCTGTTGATGGCCCCGATGC 1895 Query 20403 CGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCA 20462 |||| || || ||||| |||||| |||| ||||||||| || ||||| | ||||| | || Sbjct 1896 CGACAGCGTCCACCGCACAGATCCTGGGCAACAACGAGTCTATCGAGGCCTACACCAGCA 1955 Query 20463 ACATCTAC 20470 |||||||| Sbjct 1956 ACATCTAC 1963 >seq34237 Length=22483 Score = 105 bits (116), Expect = 7e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 ||||||||| |||||||| ||||||||||||||||| ||| ||| || | |||||| Sbjct 12858 GCTTTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGCTCATTCGCTGCCATCTACTGGCTA 12799 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | ||||| ||||| ||||| | | |||||| |||||||| |||||| ||| Sbjct 12798 AAGAAGAGAGGCCTAATGCCTGGCCTCACCTACTCCAATGAGCTGATCAGCCGGGATGAG 12739 Query 60111 G 60111 | Sbjct 12738 G 12738 >seq123332 Length=1279 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| ||||||||||||||||| || ||| ||| || |||||||| || ||| | ||| Sbjct 1089 GTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGCTGAAGAAGAGAGGC 1030 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||||| ||||||| |||||||||||||| || Sbjct 1029 CTGATGCCCGGCCTGACCTTCTCCAACGAGCTCAT 995 >seq44434 Length=8273 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| |||||||| | ||| || ||||||||||| | |||| ||||||||| Sbjct 2287 CTCTACGATCTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCT 2346 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||| ||| ||||||||||||||| |||||| || || ||||| || Sbjct 2347 CTTTCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTC 2394 >seq98823 Length=7499 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || |||||| Sbjct 6826 ATCTACCGGGTGGAGAACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACC 6767 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||| || || || || Sbjct 6766 AACTTCTTTGAGAAGCGTGTGGGCGAGTA 6738 >seq98821 Length=8341 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || |||||| Sbjct 1387 ATCTACCGGGTGGAGAACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACC 1446 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||| || || || || Sbjct 1447 AACTTCTTTGAGAAGCGCGTGGGCGAGTA 1475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547612452413280