Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq97926 181 1e-40 seq25611 95.1 1e-14 seq123332 89.7 6e-13 seq34237 82.4 8e-11 >seq97926 Length=3727 Score = 181 bits (200), Expect = 1e-40 Identities = 469/702 (67%), Gaps = 12/702 (2%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || || || |||||||| || || || |||||| || Sbjct 674 AAGTGGTTCACCCACGCCTCCCCCACTCTCTTCAACGCAGGAACCAACAGGCCTCAGCTG 733 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| | || |||||||| ||| ||||| ||||| || || ||||| Sbjct 734 TCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATTTATGACACGCTG 793 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTG-CTCGAACGT 53445 ||| |||| |||| ||||||||| | |||| || || || | ||| | | | Sbjct 794 AAGCAGTGCGCCCTCATCTCCAAATCAGCGGGAGGAATTGGCGT-GGCTGTCAGCTGCAT 852 Query 53446 CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTAT 53505 | | | | ||| | ||| || || |||||| | || | || | || || || Sbjct 853 CAGATCAACCGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGCCTAGTCCCCAT 912 Query 53506 GCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGG 53565 ||| | || | |||||||||||| || |||||| ||||||| || ||| | || Sbjct 913 GCTGAGAGTTTACAACAACACGGCACGTTACGTCGACCAGGGAGGCAACAAGAGACCCGG 972 Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG-C 53624 | |||||||| ||||| |||||||||||| || | | ||||| | |||||| Sbjct 973 AGCCTTCGCCATGTACCTGGAGCCGTGGCACTTTGATGTGTTTGAGTTCTTGGAGCTGAA 1032 Query 53625 GTCTGAATCAGGGTGACGAAGAG--ATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGA 53681 | | ||||| | || ||| | | || | | ||||| || ||| || ||||||| Sbjct 1033 GAAAAACACAGGG-AAGGAGGAGCAAAGAGC--CAGAGACCTTTTCTACGGC-CTGTGGA 1088 Query 53682 TTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGA 53741 | ||||||||||||||| | | ||||| | || | || |||| |||||||| |||| Sbjct 1089 TCCCGGACCTCTTCATGAAGAGAGTGGAAAGCAACCAAGACTGGTCTCTGATGTGTCCGA 1148 Query 53742 ACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACG 53800 ||||| || || || | | ||| || || ||||||||| | | | | || | Sbjct 1149 ACGAGGCTCCTGGGCTGGATGAGTG-CTGGGGGGAGGAGTTTGAGGCGCTCTACACCAAA 1207 Query 53801 TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATC 53860 || | ||||||| |||| ||| ||||| | | | ||| | || || Sbjct 1208 TATGAGAAGGAGGGCCGGGTCAAGCGTGTGGTGAAGGCTCAGCAACTGTGGCACGCCATT 1267 Query 53861 CTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAG 53920 | || |||| || || || || ||||||||| ||||| || | |||| | Sbjct 1268 ATTGAGTCCCAGACAGAAACCGGTACACCGTACATGCTGTACAAAGACGCCTGCAACAGG 1327 Query 53921 AAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||||||||||| |||| | ||| |||||||| |||||| Sbjct 1328 AAGAGCAACCAGCAGAATCTGGGCACCATCAAATGCAGCAAC 1369 >seq25611 Length=15385 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || ||||||| || |||||||| ||||| ||| | ||| ||||| || || Sbjct 3198 GTGAAGATATAACGAGGACTGGCAGCATCTTTGCCTCCATTGATACGAGTACCAAACTGA 3257 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| ||||||| |||||||||||| ||||||||||| || Sbjct 3258 CCCAGTGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGAGCCAAGTTCACG 3317 Query 117425 ATCGT 117429 || || Sbjct 3318 ATGGT 3322 >seq123332 Length=1279 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | || || || || | ||||| ||||| || || | ||||||| Sbjct 983 TCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 1042 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| ||||||||| |||||||||| ||||||||| || || ||| || ||||| Sbjct 1043 AGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGGCC 1102 Query 74892 AC 74893 || Sbjct 1103 AC 1104 >seq34237 Length=22483 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||| | ||| |||| ||||| || | | ||||||||||| || || | |||||| Sbjct 12740 TCATCCCGGCTGATCAGCTCATTGGAGTAGGTGAGGCCAGGCATTAGGCCTCTCTTCTTT 12799 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| |||||||| ||| || ||| ||||||||||||||| || ||||| || Sbjct 12800 AGCCAGTAGATGGCAGCGAATGAGCCAGAGAAGAAGATGCCTTCCACTGCTGCAAAAGCC 12859 Query 74892 ACAAGGCG 74899 ||||| || Sbjct 12860 ACAAGTCG 12867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546305829307600