Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq97926 158 1e-33 seq44434 89.7 6e-13 >seq97926 Length=3727 Score = 158 bits (174), Expect = 1e-33 Identities = 883/1391 (63%), Gaps = 63/1391 (5%) Strand=Plus/Minus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| | ||| | | ||||||||| || |||||||| || ||| ||| ||||||||| Sbjct 1950 GTGTAGGCCTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGACGCTGTCGGCATC 1891 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAA-ATCTGA 80513 ||| | | |||||| |||| || |||||| || ||| | ||| || | || Sbjct 1890 GGGGCCATCAACAGACTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTC 1831 Query 80514 CCAAAAATCAACCCCAACGCTGT----GAC----CCCACATGTCGTGCTGCAAGATGCCC 80565 | | || || || |||| | | |||||||||| | ||| | ||||||| Sbjct 1830 C----AGTC--CCACAGGTCTGTCGGCGTCTTCTCCCACATGTCATACTGGAGGATGCCC 1777 Query 80566 T--CCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCAC 80623 | | ||| ||||| || | |||||||||| | ||| | | |||||| || | Sbjct 1776 TTGCTGACA--GGAGAGCCTTGGTACGTCTCGTAGGCGCCGTGCTCGCGGGCCAGATCGC 1719 Query 80624 AC---GACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGC 80680 | | ||||| ||| |||| || ||| ||| |||| |||| | | || Sbjct 1718 AGCTTGCCTCCA---GGGAAGCGTAGTAGATGGTCTCGAAGATCTGGATGTTGAG-CAGC 1663 Query 80681 -GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGA 80739 | |||| ||| || || | | | ||||| ||||| | || ||||| || || Sbjct 1662 TGAGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCCGCCAGTCCTTGG 1603 Query 80740 ACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAA 80799 || ||||| |||| || | ||| |||||||| || |||||| || || | |||||| Sbjct 1602 ACACCGATCCCGATTGGCCTGTGACGCTTGTTGGACTTCTCGGCTTCGGGCACTGGGTAG 1543 Query 80800 AAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGT---GTAACATCATGA 80856 ||||| | || |||| ||||||||| | | || | | || || | Sbjct 1542 AAGTTGATGTCAATGATCTTGTTCAGGTT---TTTCACGATTACTTTGGTCACGTAGGCC 1486 Query 80857 AGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAATGCCGGA-AGGCTCAG------GGA 80909 ||||| | |||||| || | ||| || || || || | | | | || ||| Sbjct 1485 AGTTTTTTAAAGTCAAA---GGTCCGCT-CAGGGGTGACGTACATGTTGAGAGCGATGGA 1430 Query 80910 CGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAA 80969 ||||||||| || || |||||||| || || || | || ||||| || ||||| | Sbjct 1429 CGCCAGATTACAGACCGCCACCTCGTCGTCACTGGTGTATTCAACGATCTCTGTGCAGAG 1370 Query 80970 ATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTT 81029 || | || || || ||||| || | |||||| ||| |||||| ||||| || Sbjct 1369 GTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTT 1310 Query 81030 GTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTC 81089 ||| ||||||||| |||||||| || ||| |||| | ||||||| ||| | | Sbjct 1309 GTACAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCGTGCCACAGTTG 1250 Query 81090 GCGCGCCTTGACCAC---CTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTT 81145 | ||||| ||||| ||| || ||| || | |||| |||| ||| ||| Sbjct 1249 CTGAGCCTTCACCACACGCTT---GACCCGGCCCTCCTTCTCATATTTGGTGTAGAGC-G 1194 Query 81146 CGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205 | || |||| | || ||| || | || |||||| || |||||||| Sbjct 1193 CCTCAAACTCCTCCCCCCAGCACTCATCCAGCCCAGGAGCCTCGTTCGGACACATCAGAG 1134 Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265 |||||| || | | || || ||||||||| ||| |||||||| ||| || || Sbjct 1133 ACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAAGAGGTCCGGGATCCACAGGCCGTAGA 1074 Query 81266 ACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTG-GTTGAGGCGCAACTCGAGAAAGTCC 81324 | ||||| | | | |||||| | ||||| ||| || ||| | || || Sbjct 1073 AAAGGTCTCTGGCTCTTTGCTCCTCCT-TCCCTGTGTTTTTCTTCAGCTCCAAGAACTCA 1015 Query 81325 ATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA----TC--GACCCCTTGCGACGG 81378 | | || ||||| |||||||| |||| ||||| || | | |||| | Sbjct 1014 AACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTG---TTG 958 Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 || ||||||| ||||||||| || || ||| | || | || ||| |||| | || Sbjct 957 CCTCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAGGCCG 898 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAA 81498 | || | ||||| || || |||| ||| | | | | ||||| | Sbjct 897 TTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCC 838 Query 81499 AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATT 81558 | || || || || | | || || || | || ||| | |||| || |||||||| Sbjct 837 ACGCCAATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATG 778 Query 81559 CCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTT 81618 || |||||||| || | |||||| | |||| ||| ||||| |||| |||||| || || Sbjct 777 CCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTG 718 Query 81619 GAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCA 81678 | || || ||||| || || |||| ||||| |||| | | ||||| ||||| Sbjct 717 GTTCCTGCGTTGAAGAGAGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTG 658 Query 81679 TAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAAC 81738 ||||| || || | ||||| | ||||| || |||| | || | ||| | | Sbjct 657 TAGGTCTCGATGGCTTCATCAATATTTTTTCCGTGGATTCCGACCGACACTCTCATGAGC 598 Query 81739 ATGTACTGGGG 81749 |||| ||| || Sbjct 597 ATGTGCTGCGG 587 >seq44434 Length=8273 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| ||||| || ||||| | ||| || || || || ||||| || | |||||| Sbjct 2286 ACTCTACGATCTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGC 2345 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| |||||||||||| |||||| || || ||||| || |||||||| Sbjct 2346 TCTTTCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTCTGTCTGTGACT 2405 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 || || ||||| ||| | || | ||||| ||||| Sbjct 2406 CGATGACGGCGTACCACAGCTGCTGAGCCTTCACCAC 2442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569361816969440