Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq30562 161 8e-35 seq15693 114 1e-20 >seq30562 Length=7703 Score = 161 bits (178), Expect = 8e-35 Identities = 133/162 (82%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | |||||||||||||| || || Sbjct 1714 AGTCCTGTGATGTGTGCGATCATGTATGTGAGCAGTGCATAGCTGGCGATGTTGAAAGGC 1655 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || ||||| ||||| || ||||| | |||||| ||||||||||| ||||| ||||||| | Sbjct 1654 ACTCCGAGGCCCATATCGCCCGAGCGCTGGTACAGCTGACACGACAGCTCACCGTCGCAC 1595 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 ||||| |||||||| | ||||||||| || || ||||||||| Sbjct 1594 ACGTAGAACTGACAGAGGGCGTGGCAGGGCGGCAGAGCCATG 1553 Score = 159 bits (176), Expect = 3e-34 Identities = 143/178 (80%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||||| |||||||| || || || |||||||||||||| |||||||| ||||| ||||| Sbjct 720 CATGTTTGTGTACTCAGCGCCAAAGTGCCTCCACTGGAAACCGTACACGGGTCCGAGGTC 661 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||||| || |||| ||| || |||||||||| ||||| | ||| |||||||| || Sbjct 660 GCCCTCCTCTCTGTCTGTGAACCCGCTCTTGTCCAGGAAGTCCCGGGAGCCGTTGGCATC 601 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAA 30399 ||||||| | ||||| ||||| |||||||| |||| ||||| || |||| |||||| Sbjct 600 CCAGATCCTCACCCCTTTCTCCGAGAGCTCCTTGGCATTTGTTGATCCCTGAGACGAA 543 >seq15693 Length=12399 Score = 114 bits (126), Expect = 1e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || ||||||||||||||||| | ||| ||||||| ||| |||||| ||||| || ||| Sbjct 4851 TTGAGCTCCCTGCTGAGGACGATGTTGATCCTGTTATTCAAAGGTCTGTTCTTCTCTGGG 4792 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||| ||||| ||||| || ||||| |||||||| |||||||| ||| Sbjct 4791 ATGGAAAACCACGTCTTCCTGCCCATGATCACCACATTCTGCTTTCCT 4744 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 110159 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAGTGTCGCACGCAA 110218 |||||||||||||||||||| | || || || | || ||||| || ||||| ||| ||| Sbjct 7527 ACTCTGGCAGTAGACGATATTTGTCCAGGCTGATTTCAGGGAGGAATGTGTCACACTCAA 7468 Query 110219 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTATCCCCGGGCTCTCCATGAGCTCC 110277 | ||| || | || |||||||| || ||| | |||||||||||||||| | |||| Sbjct 7467 ACTGCTTCAGGATTTGTGTGACAAAGAGTCTCCTAGTCCCCGGGCTCTCCATCAACTCC 7409 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 110560 AGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCG 110619 ||||| | |||||||| ||||| | ||| | || |||||||||| ||| |||||| | Sbjct 2957 AGTCTGACTGGATGCCAGGGCAGGTTTCCACTCTTGCCGATGCCCAGGTCAGGACACACT 2898 Query 110620 GCCACGATACCGTTCAGAATGAGGGGCAT 110648 ||||||||||||||||| ||| ||| ||| Sbjct 2897 GCCACGATACCGTTCAGGATGCGGGACAT 2869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405651489217704