Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq30562 122 8e-23 >seq30562 Length=7703 Score = 122 bits (134), Expect = 8e-23 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||||||||||||| ||||||| ||||||||| || |||| || || ||||| | Sbjct 566 CCAAGGAGCTCTCGGAGAAAGGGGTGAGGATCTGGGATGCCAACGGCTCCCGGGACTTCC 625 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||||||| | |||||| || | |||||||||||| | || || || ||||| |||| Sbjct 626 TGGACAAGAGCGGGTTCACAGACAGAGAGGAGGGCGACCTCGGACCCGTGTACGGTTTCC 685 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| |||||||| || ||||| Sbjct 686 AGTGGAGGCACTTTGGCGCTGAGTA 710 Score = 122 bits (134), Expect = 8e-23 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||| ||||||||||| ||||| || || || | |||||||||||| Sbjct 710 TACTCAGCGCCAAAGTGCCTCCACTGGAAACCGTACACGGGTCCGAGGTCGCCCTCCTCT 651 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | || |||||| | ||||||||| ||||| || || |||| || ||||||||| || Sbjct 650 CTGTCTGTGAACCCGCTCTTGTCCAGGAAGTCCCGGGAGCCGTTGGCATCCCAGATCCTC 591 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 ||||| |||||||||||||| Sbjct 590 ACCCCTTTCTCCGAGAGCTCCTTGG 566 Score = 120 bits (132), Expect = 3e-22 Identities = 118/150 (79%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAATGGGGAGCTGTC 34635 ||||| || || || |||||| ||||||| || |||||||| |||| || |||||||| Sbjct 1554 ATGGCTCTGCCGCCCTGCCACGCCCTCTGTCAGTTCTACGTGTGCGAC-GGTGAGCTGTC 1612 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 || ||||| || || || ||||| || ||||| | || ||||| |||||||| || || Sbjct 1613 GTGTCAGCTGTACCAGCGCTCGGGCGATATGGGCCTCGGAGTGCCTTTCAACATCGCCAG 1672 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCA 34725 || || |||||||| ||||||||||| || Sbjct 1673 CTATGCACTGCTCACATACATGATCGCACA 1702 Score = 120 bits (132), Expect = 3e-22 Identities = 118/150 (79%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| || || || || |||||||| ||||| || | ||| Sbjct 1702 TGTGCGATCATGTATGTGAGCAGTGCATAGCTGGCGATGTTGAAAGGCACTCCGAGGCCC 1643 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 || || ||||| || || || ||||| || |||||||| || |||| |||||||| || Sbjct 1642 ATATCGCCCGAGCGCTGGTACAGCTGACACGACAGCTCACC-GTCGCACACGTAGAACTG 1584 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 ||||||| |||||| || || || ||||| Sbjct 1583 ACAGAGGGCGTGGCAGGGCGGCAGAGCCAT 1554 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/95 (81%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 34472 GGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGAC 34531 ||||| || | |||||||||||| | || ||||||||| | ||| ||||||| || ||| Sbjct 1311 GGACAAGGTGTCGACCAGCTGCAGAAAGTCATCGACACCATCAAGAGGAACCCAGAGGAC 1370 Query 34532 AGAAGGATCGTGATGTGCGCGTGGAA-CCCGAAGG 34565 ||| ||||| | |||||||| ||||| ||| |||| Sbjct 1371 AGACGGATCATCATGTGCGCCTGGAATCCCAAAGG 1405 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/95 (81%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 6780 CCTTCGGG-TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTG 6838 |||| ||| ||||| |||||||| | ||||| |||||| || ||||||| ||| | |||| Sbjct 1405 CCTTTGGGATTCCAGGCGCACATGATGATCCGTCTGTCCTCTGGGTTCCTCTTGATGGTG 1346 Query 6839 TCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCC 6873 ||||| || | |||||||||||| | || ||||| Sbjct 1345 TCGATGACTTTCTGCAGCTGGTCGACACCTTGTCC 1311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447516816356640