Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq85215 178 3e-39 seq104204 107 4e-18 seq36340 89.7 1e-12 seq92941 87.8 4e-12 >seq85215 Length=7700 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || ||||| || || |||||||| || |||||||| || || | || Sbjct 6878 TCCACGGAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAG 6819 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||||||||||||||| || |||||||| | | || ||||||||||| | Sbjct 6818 GGTGCGGCCATCTTCCAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCAGGAGGGAT 6759 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||| || |||||||||||| || |||||||| ||||||||| | || ||||| Sbjct 6758 GCCTTCTTTATCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTGGGCTCGACCTC 6699 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | |||||| ||||| || ||||| ||||| ||||| | ||||||||| Sbjct 6698 TAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATTTT 6651 >seq104204 Length=5474 Score = 107 bits (118), Expect = 4e-18 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || ||||||||||| |||||||||||||| | | ||| ||| ||| ||||| |||||| Sbjct 4135 GGCAGAGGAGGACAGTCTGCTCTGCGTTTCGCTCGTCTTAGAATGGAGAAGAGACACAAC 4194 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAG-TGTT--TTATCAAAGACAACAAGTGT 139938 || |||||||||| || |||| || | ||| |||| || ||| |||| |||| | Sbjct 4195 TATGTGAGAAAAGTAGCTGAGACGGCTGTCCAGCTGTTTGTTTCCAACGACA--AAGT-T 4251 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || |||| ||||| || || |||||||| ||||| | ||| Sbjct 4252 AATGTGGCAGGAATGGTCCTGGCTGGTTCTGCTGACTTCAAGACCGAGCTCAGCCAGTCT 4311 Query 139999 GACTTTTTTGACCC 140012 ||| | |||||||| Sbjct 4312 GACATGTTTGACCC 4325 >seq36340 Length=11583 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||||||||| ||| || |||||||| ||||| | ||||||||| Sbjct 9424 CCTTCCTTGTCCTGGATCTTAGCTTTGACATTTTCGATAGTGTCGCTGGGCTCAACCTCG 9365 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| ||||| | ||||| || || | |||||| || Sbjct 9364 AGGGTGATGGTCTTCCCCGTCAACGTCTTCACGAAGATCTGCATGTT 9318 >seq92941 Length=5299 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || || ||||| || |||||||| || || | ||||| | |||||| Sbjct 5197 AGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 5256 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGG 211003 |||||||||||||| |||||||| | | || |||||||| Sbjct 5257 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGG 5297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157175811743630