Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq85215 131 4e-25 seq121790 114 3e-20 seq109087 109 1e-18 >seq85215 Length=7700 Score = 131 bits (144), Expect = 4e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| ||||| ||||| ||||| || || |||| ||||| |||| | || Sbjct 6875 ACGGAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 6816 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| ||||||||||| |||||||| | | || ||||| || || || || Sbjct 6815 GCGGCCATCTTCCAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCAGGAGGGATGCC 6756 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || || ||||||||| ||| || ||| |||||||| || || || ||||| Sbjct 6755 TTCTTTATCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTGGGCTCGACCTCTAA 6696 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||||||| || | || || | || | |||||||| Sbjct 6695 AGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATTTT 6651 >seq121790 Length=4289 Score = 114 bits (126), Expect = 3e-20 Identities = 81/93 (87%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 370680 GACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAA 370739 ||||||||||||| ||||||||||| ||||| |||||||| ||||| |||| ||| ||| Sbjct 3256 GACCAAAAAATCAAAATAAATGTTGGTAAAGAATAGGATCTCCTCCACCTGCTGGGTCAT 3197 Query 370740 AAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 | || ||||||||||| ||||||||||||| || Sbjct 3196 AGAAACTAGTATTAAAGTTTCTATCAGTTAGAA 3164 >seq109087 Length=16527 Score = 109 bits (120), Expect = 1e-18 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 ||||| || || ||||||| |||||||| || |||||||||||| | || || || || Sbjct 11341 TACAATGTAATCGTTACGGCCCATGCCTTCGTAATGATTTTCTTTATAGTAATACCAATT 11282 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 ||||| || || || ||||| ||| | ||||| ||||||| || || || || ||||| Sbjct 11281 ATGATTGGAGGATTTGGAAACTGACTTATTCCTCTAATGATCGGAGCCCCCGACATGGCA 11222 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || ||| | | ||||| || || || ||| | || || || || || |||| Sbjct 11221 TTCCCACGAATGAACAACATGAGCTTCTGACTCCTTCCTCCCTCTTTCCTTCT 11169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190498104985028