Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq30562 149 5e-31 seq15693 109 4e-19 >seq30562 Length=7703 Score = 149 bits (164), Expect = 5e-31 Identities = 130/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | |||||||||||||| || ||| Sbjct 1714 AGTCCTGTGATGTGTGCGATCATGTATGTGAGCAGTGCATAGCTGGCGATGTTGAAAGGC 1655 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || ||||| ||||| || || || | |||||| ||||| ||||| ||||| ||||||| | Sbjct 1654 ACTCCGAGGCCCATATCGCCCGAGCGCTGGTACAGCTGACACGACAGCTCACCGTCGCAC 1595 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATG 29875 ||||| |||||||| | ||| ||||| || || || |||||| Sbjct 1594 ACGTAGAACTGACAGAGGGCGTGGCAGGGCGGCAGAGCCATG 1553 Score = 143 bits (158), Expect = 2e-29 Identities = 126/156 (81%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| |||||||| ||||| ||||| ||||| || |||| ||| Sbjct 698 AAGTGCCTCCACTGGAAACCGTACACGGGTCCGAGGTCGCCCTCCTCTCTGTCTGTGAAC 639 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || |||||||||| ||||| | ||| |||||||| ||||||||| | ||||| ||||| Sbjct 638 CCGCTCTTGTCCAGGAAGTCCCGGGAGCCGTTGGCATCCCAGATCCTCACCCCTTTCTCC 579 Query 30137 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAA 30171 |||||||| |||| ||||| || |||| |||||| Sbjct 578 GAGAGCTCCTTGGCATTTGTTGATCCCTGAGACGAA 543 >seq15693 Length=12399 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||||||||||||||| | ||| | ||||| ||| |||||| ||||| || ||| Sbjct 4851 TTGAGCTCCCTGCTGAGGACGATGTTGATCCTGTTATTCAAAGGTCTGTTCTTCTCTGGG 4792 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||| ||||| ||||| || ||||| |||||||| |||||||| ||| Sbjct 4791 ATGGAAAACCACGTCTTCCTGCCCATGATCACCACATTCTGCTTTCCT 4744 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 114443 AGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCT 114502 ||||| || |||||||| ||||| | ||| | || |||||||||| ||| |||||| || Sbjct 2957 AGTCTGACTGGATGCCAGGGCAGGTTTCCACTCTTGCCGATGCCCAGGTCAGGACACACT 2898 Query 114503 GCCACGATACCGTTCAGAATGAGGGGCAT 114531 ||||||||||||||||| ||| ||| ||| Sbjct 2897 GCCACGATACCGTTCAGGATGCGGGACAT 2869 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 114042 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAATGTCGCACGCAA 114101 |||||||||||||||||||| | || || || | || ||||| || |||| ||| ||| Sbjct 7527 ACTCTGGCAGTAGACGATATTTGTCCAGGCTGATTTCAGGGAGGAATGTGTCACACTCAA 7468 Query 114102 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATGAGCTCC 114160 | ||| || | || |||||||| || ||| | ||||||||||||||||| | |||| Sbjct 7467 ACTGCTTCAGGATTTGTGTGACAAAGAGTCTCCTAGTCCCCGGGCTCTCCATCAACTCC 7409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405504527930932