Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq97926 446 2e-120 seq44434 105 9e-18 >seq97926 Length=3727 Score = 446 bits (494), Expect = 2e-120 Identities = 1282/1961 (65%), Gaps = 23/1961 (1%) Strand=Plus/Minus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || || |||||| | | ||| || || || | || || |||||||| Sbjct 2058 TTCTTCATCTCCTCGCTCCACAGTCCTCGCTCCGTCAAGTCTTTGAGCAGGTGAGGATTG 1999 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || || || ||||| || | ||||| || ||||| || || ||||| || | || Sbjct 1998 ACGATCTGGAACTCTCCGGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 1939 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | ||| || ||||| |||| || || || || || || || ||||| || |||| ||| Sbjct 1938 ATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGACGCTGTCGGCATCGGGGCCATCAAC 1879 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | ||| || || | || ||| | ||| || || || || ||||| ||||| || Sbjct 1878 AGACTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 1819 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 |||| || ||||| | || || || || || || || || || || || Sbjct 1818 TCTGTCGGCGTCTTCTCCCACATGTCATACTGGAGGATGCCCTTGCTGACAGGAGAGCCT 1759 Query 77361 TTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCG 77420 | || || || || | || | || || || || || || |||| | || Sbjct 1758 TGGTACGTCTCGTAGGCGCCGTGCTCGCGGGCCAGATCGCAGCTTGCCTCCAGGGAAGCG 1699 Query 77421 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGA 77480 || || || || ||||| |||| | ||||| || || || || ||||| || Sbjct 1698 TAGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGG 1639 Query 77481 TAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGT 77540 ||| | | || || |||||||| || | ||| || || || || || || || || || Sbjct 1638 TAACGCATCAGGATGAAGGCATCCGCCAGTCCTTGGACACCGATCCCGATTGGCCTGTGA 1579 Query 77541 CTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTG 77600 | ||| ||||| | | ||||| || | || || | || ||||| || || || || Sbjct 1578 CGCTTGTTGGACTTCTCGGCTTCGGGCACTGGGTAGAAGTTGATGTCAATGATCTTGTTC 1519 Query 77601 AGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCT 77660 || ||| | || | |||||| ||||| ||||| ||| ||||| | | || Sbjct 1518 AGGTTTTTCACGATTACTTTGGTCACGTAGGCCAGTTTTTTAAAGTCAAAGGTCCGCTCA 1459 Query 77661 A---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCG 77717 | || ||||||| | ||| || || || |||||||| || || ||||| | | Sbjct 1458 GGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCGTCGTCA 1399 Query 77718 TTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGT 77777 ||| |||| | ||||| || || || || || |||||||| ||||||||||| || Sbjct 1398 CTGGTGTATTCAACGATCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGC 1339 Query 77778 TGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATC 77837 ||||||||||| | ||||| | ||| || || || || |||| || |||||||| || Sbjct 1338 TGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCGGTTTCTGTC 1279 Query 77838 TGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTATCGCCT 77896 || || || ||||| | | ||| | | || ||| || | || | ||| || | Sbjct 1278 TGGGACTCAATAATGGCGTGCCACA-GTTGCTGAGCCTTCACCACACGCTTGACCCGGCC 1220 Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||| | ||||||| || || ||| ||||| || || ||||| ||||||| || Sbjct 1219 CTCCTTCTCATATTTGGTGTAGAGCGCCTCAAACTCCTCCCCCCAGCACTCATCCAGCCC 1160 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 ||| || || || ||||||| |||||||| | | | || |||| ||||| | Sbjct 1159 AGGAGCCTCGTTCGGACACATCAGAGACCAGTCTTGGT-TGCTTTCCACTCTCTTCATGA 1101 Query 78016 AGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 |||| || || ||||| || || || || || |||| || ||| || || || || ||| Sbjct 1100 AGAGGTCCGGGATCCACAG-GCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTCCCT 1042 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 || || || || || || | ||||| | | |||| | ||||| || || || || || Sbjct 1041 GTGTTTTTCTTCAGCTCCAAGAACTCAAACACATCAAAGTGCCACGGCTCCAGGTACATG 982 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | |||| |||| || || |||||||| || | || | || ||||| || ||| Sbjct 981 GCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAA 922 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 ||||||| ||| || | | ||||| || | || || || || | || || || || Sbjct 921 ACTCTCAGCATGGGGACTAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCG 862 Query 78255 CTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314 ||| | || || | | | || |||||||| || || || || || ||| Sbjct 861 GTTGATCTGATGCAGCTGACAGCCACGCCAATTCCTCCCGCTGATTTGGAGATGAGGGCG 802 Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAA 78374 || | |||| || || || || || || || ||||| ||| ||||| || || || Sbjct 801 CACTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAG 742 Query 78375 CAGCTAGACATTTGA----TGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATG 78430 ||||| |||| ||| || || |||||||| || || | || || || || || Sbjct 741 CAGCTGGACAGCTGAGGCCTGTTG----GTTCCTGCGTTGAAGAGAGTGGGGGAGGCGTG 686 Query 78431 CGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTG 78490 || ||||| || || || || || ||||| || || || ||| || || | | Sbjct 685 GGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCTTCATCAATATTTTTTCC 626 Query 78491 ATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATT 78550 || ||||| |||| || | ||| | ||| ||||| |||| || || || || Sbjct 625 GTGGATTCCGACCGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTT 566 Query 78551 TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 78610 || ||||||| ||| || |||| ||| || || ||||| ||||||| || || || Sbjct 565 GATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATC 506 Query 78611 TCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGAC 78670 ||| ||| | || || | || || || ||||||| | | ||| || | ||| Sbjct 505 TCTGTCGAAGATGATGGCGGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGT---TGAG 449 Query 78671 AGT---AGTTGAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAA 78727 || | || || || || || | ||| || || || ||||| ||| Sbjct 448 CGTCTCCTTGGAGATCATGGGGGAGTGGCGTTTATTCAAGGGGTTGACGTAGTTGTATAG 389 Query 78728 ATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTAT 78787 ||| ||||| || ||||| || | ||| || || |||||||| || || || || || || Sbjct 388 ATCCTCCATCACGTCACTGAACACTTTCTTCGTCTCCTTGTGGAGGTTTGAGACGGCAAT 329 Query 78788 TCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGC 78847 | |||||| || || ||||| || || |||| || || ||||| || || || || Sbjct 328 CCGTGCAGCGAGGATGGCATAGTCGGGGTGTTTAGTTGTGAGCGTGGCGGCGATCTCCGC 269 Query 78848 CGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCAT 78907 |||| | || | ||| | || ||||| || | || | || ||||| || ||||| Sbjct 268 TGCTAGCGTGTCCAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGAATCACCTTCAT 209 Query 78908 GGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAATACG 78967 | || | | | ||||| ||||| || | ||||| || || || | || || || Sbjct 208 CGTAATCTGGGCCGGATCCACAAAGTCGGAGTTCAGCCCGTAGCAGAGCTTCTGGATGCG 149 Query 78968 AGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 ||| ||||||||||| || || || ||| | || ||||| Sbjct 148 AGAGGTGATTTTATCGAACATGACGCGCTCTTGGCGTCCAT 108 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| |||||||| |||| |||| || | || || || || || || | Sbjct 2630 TCCAGCCGTAGAAGTGCATGCTGGTCAATTTGCCGTAGTTTGGCTCTGCGATGTGGATGT 2571 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||||||||| || ||||| || || | || || ||||| || | || |||| Sbjct 2570 TCAGGGACTGACTTTGGTCAATGAAGGCGCCACGGTCGGCGGCCATCTTGAGAACTGTCT 2511 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| ||||||||| | ||||| | | || || | ||||||||||| Sbjct 2510 TCTGAGAAATTTCCCAGACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 2460 >seq44434 Length=8273 Score = 105 bits (116), Expect = 9e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || |||||||| || ||||||| ||||||||||| || |||||||||||| | Sbjct 2294 ATCTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTTCTG 2353 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGAT 77848 ||||| | |||||| || || || | || || |||||||| ||||||| ||||| Sbjct 2354 TTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTCTGTCTGTGACTCGAT 2409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693513374751680