Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq97926 506 3e-138 seq44434 89.7 7e-13 seq34237 84.2 3e-11 >seq97926 Length=3727 Score = 506 bits (560), Expect = 3e-138 Identities = 1285/1944 (66%), Gaps = 23/1944 (1%) Strand=Plus/Minus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| || |||||| | || ||| || || || | || || |||||||| Sbjct 2058 TTCTTCATCTCCTCGCTCCACAGTCCTCGCTCCGTCAAGTCTTTGAGCAGGTGAGGATTG 1999 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || || || ||||| || | ||||| || ||||| || || ||||| || | || Sbjct 1998 ACGATCTGGAACTCTCCGGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 1939 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | ||| || ||||| |||| || || || || || || |||||||| || |||| ||| Sbjct 1938 ATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGACGCTGTCGGCATCGGGGCCATCAAC 1879 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | ||| || || | || ||| | ||| || || || || ||||| ||||| || Sbjct 1878 AGACTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 1819 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 |||| || ||||| | || || || || || || ||||| || || || Sbjct 1818 TCTGTCGGCGTCTTCTCCCACATGTCATACTGGAGGATGCCCTTGCTGACAGGAGAGCCT 1759 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | || || ||||| | |||| || || || ||||| || ||||| | | | || Sbjct 1758 TGGTACGTCTCGTAGGCGCCGTGCTCGCGGGCCAGATCGCAGCTTGCCTCCAGGGAAGCG 1699 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 || || || || ||||| |||| | || || || || || | || ||||| || Sbjct 1698 TAGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGG 1639 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 ||| | | || || || ||||| || ||||| || || || || || || || || || Sbjct 1638 TAACGCATCAGGATGAAGGCATCCGCCAGTCCTTGGACACCGATCCCGATTGGCCTGTGA 1579 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | ||| ||||| | || ||||| || | ||||| | || || || || || || || Sbjct 1578 CGCTTGTTGGACTTCTCGGCTTCGGGCACTGGGTAGAAGTTGATGTCAATGATCTTGTTC 1519 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCT 76255 || ||| | || | |||||| ||||| ||||| ||| ||||| | | || Sbjct 1518 AGGTTTTTCACGATTACTTTGGTCACGTAGGCCAGTTTTTTAAAGTCAAAGGTCCGCTCA 1459 Query 76256 A---TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312 | || |||| || ||||| || || || |||||||| || || ||||| | || Sbjct 1458 GGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCGTCGTCA 1399 Query 76313 TTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGT 76372 ||| |||| | ||||| ||||| || || || || ||||| || || ||||| || Sbjct 1398 CTGGTGTATTCAACGATCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGC 1339 Query 76373 TGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATC 76432 ||||||||||| |||| || | ||| || || || | |||| || || ||||| || Sbjct 1338 TGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCGGTTTCTGTC 1279 Query 76433 TGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATTTGTATCGCTT 76491 || || || ||||| | | ||| | | || ||| || | | | ||| || Sbjct 1278 TGGGACTCAATAATGGCGTGCCACA-GTTGCTGAGCCTTCACCACACGCTTGACCCGGCC 1220 Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||| | ||||||| || || | | ||||| || || ||||| ||||||| || Sbjct 1219 CTCCTTCTCATATTTGGTGTAGAGCGCCTCAAACTCCTCCCCCCAGCACTCATCCAGCCC 1160 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610 |||| || ||||||||||||| ||||| || | | | || || | ||||| | Sbjct 1159 AGGAGCCTCGTTCGGACACATCAGAGACCAGTCTTGGT-TGCTTTCCACTCTCTTCATGA 1101 Query 76611 AGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 |||| || || ||||| || || || || || |||| || ||| | || || || ||| Sbjct 1100 AGAGGTCCGGGATCCACAG-GCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTCCCT 1042 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 || || || || || || | |||||| | | |||| | ||||| || || || || || Sbjct 1041 GTGTTTTTCTTCAGCTCCAAGAACTCAAACACATCAAAGTGCCACGGCTCCAGGTACATG 982 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | | || |||| || || |||||||| || | || | || ||||| || ||| Sbjct 981 GCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAA 922 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 ||||||| ||| || | | |||||| || | || || || || | || || || || Sbjct 921 ACTCTCAGCATGGGGACTAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCG 862 Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 || | || || | || | ||| |||||||| || ||| ||||| || || Sbjct 861 GTTGATCTGATGCAGCTGACAGCCACGCCAATTCCTCCCGCTGATTTGGAGATGAGGGCG 802 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAA 76969 || | |||| |||||||| ||||| || || || || ||| ||||| || || || Sbjct 801 CACTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAG 742 Query 76970 CAGCTAGACATTTGA----TGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATG 77025 ||||| |||| ||| || || |||||||| || || | || || || || || Sbjct 741 CAGCTGGACAGCTGAGGCCTGTTG----GTTCCTGCGTTGAAGAGAGTGGGGGAGGCGTG 686 Query 77026 AGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTG 77085 |||||||| || || || || || ||||| || || || || | || |||| | Sbjct 685 GGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCTTCATCAATATTTTTTCC 626 Query 77086 ATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATT 77145 || ||||| || | || | ||| | ||| ||||| ||||| || | || || Sbjct 625 GTGGATTCCGACCGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTT 566 Query 77146 TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 || ||||||| ||| || |||| ||| || || ||||| ||||||| || || || Sbjct 565 GATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATC 506 Query 77206 TCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGAC 77265 ||| ||| | || || | || || || ||| || | | | ||| || | ||| Sbjct 505 TCTGTCGAAGATGATGGCGGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGT---TGAG 449 Query 77266 AGT---GGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAA 77322 || | || || || || || | | ||| || || || ||||| ||| Sbjct 448 CGTCTCCTTGGAGATCATGGGGGAGTGGCGTTTATTCAAGGGGTTGACGTAGTTGTATAG 389 Query 77323 GTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTAT 77382 || ||||| ||||| || || | ||| || || |||||||| || || || ||||| || Sbjct 388 ATCCTCCATCACGTCACTGAACACTTTCTTCGTCTCCTTGTGGAGGTTTGAGACGGCAAT 329 Query 77383 TCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGC 77442 | ||||| || || |||||||| || |||| || ||| ||||| || || || || Sbjct 328 CCGTGCAGCGAGGATGGCATAGTCGGGGTGTTTAGTTGTGAGCGTGGCGGCGATCTCCGC 269 Query 77443 CGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCAT 77502 |||| || || | || | || || || ||| | || | || ||||| || ||||| Sbjct 268 TGCTAGCGTGTCCAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGAATCACCTTCAT 209 Query 77503 GGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTAATACG 77562 | || | | ||||| ||||| |||| ||||| || || || | || || || Sbjct 208 CGTAATCTGGGCCGGATCCACAAAGTCGGAGTTCAGCCCGTAGCAGAGCTTCTGGATGCG 149 Query 77563 AGATGTGATTTTATCAAACATGAC 77586 ||| ||||||||||| |||||||| Sbjct 148 AGAGGTGATTTTATCGAACATGAC 125 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| |||||||| || | |||| || | || || || || || || | Sbjct 2630 TCCAGCCGTAGAAGTGCATGCTGGTCAATTTGCCGTAGTTTGGCTCTGCGATGTGGATGT 2571 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||||||||| || ||||| || || | || || ||||| || | || |||| Sbjct 2570 TCAGGGACTGACTTTGGTCAATGAAGGCGCCACGGTCGGCGGCCATCTTGAGAACTGTCT 2511 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| ||||||||| | ||||| | | || || | ||||||||||| Sbjct 2510 TCTGAGAAATTTCCCAGACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 2460 >seq44434 Length=8273 Score = 89.7 bits (98), Expect = 7e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| || || || ||||| || || || ||||| |||| || || || ||| Sbjct 4345 CTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACGGCGATTCGTGCGGCCAGGATT 4404 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 |||||||||||||||| || ||| |||||| || | ||||| || | ||| || | Sbjct 4405 GCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCAGC 4464 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCAT 77502 || | ||| || ||||| | || || || || || || ||||| Sbjct 4465 TCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 4508 Score = 87.8 bits (96), Expect = 3e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387 ||||| ||||||||||| || | ||||| || || ||||| || |||||||||||| || Sbjct 2294 ATCTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTTCTG 2353 Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGAT 76443 || || | |||||| || || | | || || || ||||| ||||||| ||||| Sbjct 2354 TTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTCTGTCTGTGACTCGAT 2409 >seq34237 Length=22483 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 46684 GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA 46743 ||||| ||||||||||| || | ||| || ||||| | || || ||||| || ||||| Sbjct 12770 GTGAGGCCAGGCATTAGGCCTCTCTTCTTTAGCCAGTAGATGGCAGCGAATGAGCCAGAG 12829 Query 46744 AAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC 46787 ||||| |||||||| || || || || || ||||||| ||| || Sbjct 12830 AAGAAGATGCCTTCCACTGCTGCAAAAGCCACAAGTCGCTCCCC 12873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711748594035840