Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq85800 147 3e-30 seq80746 141 1e-28 seq80745 116 5e-21 seq70431 86.0 9e-12 >seq85800 Length=16958 Score = 147 bits (162), Expect = 3e-30 Identities = 195/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 8315 ACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCT 8374 |||||| | ||||| || ||| | | ||| | |||| || |||| || ||| Sbjct 15597 ACGTTGTTGCAGACAAGCCTCTGTAGGGAAGCGGTGTTGATAATGTCGAAGCCAACGCTG 15538 Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || |||||||||||||||||||||||| ||||||||||||| ||| ||| | ||| Sbjct 15537 CCCCCGAAGGTGCTGGGCTTCCAGTACTGCGGGGAGCAGATGGGGTTTCCCAATAAGCCC 15478 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 ||||||||||| || ||||||| ||| | ||| |||| || |||||||| || | | Sbjct 15477 TTGAGGGAGAAAGGGGCCCCCATCTCCACCATGGTCTCTCCAAAGATGGCATTTTCCCTG 15418 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 || || ||||||| | || | ||| ||||||||||| || |||| ||| || | || Sbjct 15417 GGTTTCTCCACCAGCAGGCCTGGGTAGAGCTCCACAGCGTCAACGTGTCCATACATCTCC 15358 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || ||||| || || || ||||||| Sbjct 15357 TCCAGCAATGCAGCCATTTCTTTCTCTCCTG 15327 Score = 120 bits (132), Expect = 4e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||||| |||||||| || || ||||| ||| || || || Sbjct 13576 TCACCGATCAGAATGAGTCGTGTGGTCTGAAAGAGCCTTTCGTCGTCCCAGTCAGGGTGA 13517 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| |||| || || || || ||||||||||| | ||||||||| ||||| |||||| Sbjct 13516 ACTTCCTTCAACACGTCACATACTCTGTTGTGTTCACGGAGCCAGATGGTGGCATACATC 13457 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 || || ||||| ||||||||||| ||||| || || ||||| Sbjct 13456 ATCAGACCAGGGACCAGGCCAAATGCCTCATGGCCCACAGC 13416 Score = 84.2 bits (92), Expect = 3e-11 Identities = 201/297 (68%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| || || || || || || || ||||| || || || | | | |||||||| || Sbjct 14391 CTTACCCGTCCAGCAATCTGCTTAGTAAACGACTCCACCAGGTTGTTGATGCCGTGC-TC 14333 Query 9004 A-TGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATC 9060 | | | || || ||||| |||| || ||| | |||| || | | | | ||||| Sbjct 14332 AGTTACTACAGAGGTGTTGAAGACAAACTGTTTA--TAGTTGTATTCTTTCTCCTCAATG 14275 Query 9061 TCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9120 | || | ||| ||||| || | |||||||| |||| |||| ||||| || || Sbjct 14274 TGGAAAGAATCAGGCATCAGTGGGTGCCAGTGGTACAGGGTGTTGAACTCAGATGCAATG 14215 Query 9121 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAA 9179 || || ||||||||||| || | || ||||| || || | |||| |||| || Sbjct 14214 CGGTTCTGGTACTGGAAGCGCTG-GTTGAACAGCAGCTCAGGATCAAACTTGAGCTTGAA 14156 Query 9180 ATGGTAGCCGCTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 || |||||||| || ||||| ||||| | | | | ||| |||||||| || || Sbjct 14155 GTGATAGCCGCTCAGGTGCTGCACGTAGTCCTCAATCACAATCTTGATGGTCTCTCC 14099 >seq80746 Length=1457 Score = 141 bits (156), Expect = 1e-28 Identities = 202/282 (72%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 8272 CTCCTCAT--CG-GGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGAC 8328 |||||||| || ||||| |||| | | | ||||||| |||| |||| || || Sbjct 577 CTCCTCATTTCGTGGAACATGGAAGTCCACGTAAGGACACCACTTGGTGTTGAGGCACAC 518 Query 8329 TAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCT 8388 || || | ||| | | |||||||| ||| ||| ||||| || |||||||| Sbjct 517 CAGCTTCTTCAAAGTGGAAGTTTTGACGATATTGAAGCCCGTCTCTCCCCCAAAGGTGCT 458 Query 8389 GGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGG 8448 |||||||||||| | ||||||||||| ||| |||| |||||||| |||||||| || Sbjct 457 GGGCTTCCAGTAATCTGGGGAGCAGATAGGGTTTCCCATCAGGCCTTTCAGGGAGAAGGG 398 Query 8449 AGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAA 8508 ||| |||| ||| | || |||||||| || || | | ||||||| | | |||| || Sbjct 397 AGCACCCATCTCTACCATACTCTCACCAAATATACTGCTAGGACGGGTCCTCTCCAGTAA 338 Query 8509 GAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 || |||| ||| | ||||| ||| || | ||| || ||||| Sbjct 337 GACGCCGGGGTAGAACTCCAAAGCATCTATGTCACCATAAAG 296 >seq80745 Length=10871 Score = 116 bits (128), Expect = 5e-21 Identities = 175/248 (71%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 9230 TTTCCC--CGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGG 9287 |||||| | || |||| ||| | | |||||||| || |||||||| ||| || Sbjct 6720 TTTCCCACCTATGATGACGAGCCTGGCAGTCTGGAAGAGCTGCTCGTCGTCCCAGGTGGG 6661 Query 9288 ATGTTCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTA 9347 ||||||| ||||| | || || || ||||| || ||||| ||||| || |||||||| Sbjct 6660 ATGTTCTGCCTTCAGGATGTCACAGACTCTGTTATGCTCCCTCAGCCATATGGTGGCGTA 6601 Query 9348 CATCATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTC 9407 ||| |||| || || | || |||| || |||| ||||| | ||||||||| | || Sbjct 6600 CATAGTGAGGCCCGGCAGCATGCCATAAACCTCCTGACCAATGGCCAGACGCTGATCTTG 6541 Query 9408 GGGCACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACAT 9467 || || | |||||| | ||||||||| || | || || ||||||||||| Sbjct 6540 AGGGACGTTTTTAGGATACAACATGTGCACAGGGGCTTCAGATACTAGAGGGGGATACAT 6481 Query 9468 TTCACCGT 9475 ||||||| Sbjct 6480 CTCACCGT 6473 >seq70431 Length=1334 Score = 86.0 bits (94), Expect = 9e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || |||||||||||||||||||| | || || || || ||| ||| |||||| Sbjct 456 CCTCCAAAGGTGCTGGGCTTCCAGTAATCTGGAGAACATATAGGGTTTCCCAGAAGGCCT 397 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGC 8484 || ||||||||||| || |||| ||| | |||||||| || || ||||| Sbjct 396 TTAAGGGAGAACGGGGCGCCCATCTCCACCATGCTCTCCCCAAATATGGC 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715684436740480