Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq85215 122 8e-23 seq92941 89.7 5e-13 >seq85215 Length=7700 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || ||| ||||||||| ||||| ||||||||| Sbjct 6880 CCTCCACGGAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 6821 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| |||||||| |||| | ||| ||||| | || Sbjct 6820 AGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCAGGAGGG 6761 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || || ||| || | ||||| | ||| | | ||||| || | ||| || Sbjct 6760 ATGCCTTCTTTATCC-TGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTGGGCTCGAC 6702 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || || || || ||||| || || |||||||| || Sbjct 6701 CTCTAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATTTT 6651 >seq92941 Length=5299 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || ||||||||| ||||| ||||||||||||||||| Sbjct 5191 AGACGCAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 5250 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 | || || ||||||||||| ||||| |||| | ||| ||||| Sbjct 5251 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTC 5294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461535061314400