Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq24 95.1 3e-14 seq9 89.7 1e-12 seq7 89.7 1e-12 seq5 89.7 1e-12 seq25 87.8 4e-12 >seq24 Length=30408201 Score = 95.1 bits (104), Expect = 3e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 165700 TAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGT 165759 ||| ||| | ||||| ||||||||||||||||||| ||||| ||||||| |||||| Sbjct 24414130 TAATACGTTAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGT 24414071 Query 165760 GGGTTCGAGCCCCACGATGGGC 165781 |||||||||||||||| ||||| Sbjct 24414070 GGGTTCGAGCCCCACGTTGGGC 24414049 >seq9 Length=19682451 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 9652067 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 9652126 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9652127 CCCACGTTGGGC 9652138 >seq7 Length=23593460 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 18735199 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 18735140 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18735139 CCCACGTTGGGC 18735128 >seq5 Length=26266306 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 8090859 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 8090800 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8090799 CCCACGTTGGGC 8090788 >seq25 Length=55650406 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 49833231 GCCCGGCTAGCTCAGTCGGTAGAGCATAAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 49833172 Query 165770 CCCACGATGGG 165780 |||||| |||| Sbjct 49833171 CCCACGTTGGG 49833161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823661165750