Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10 435 4e-117 >seq10 Length=32721116 Score = 435 bits (482), Expect = 4e-117 Identities = 1273/1947 (65%), Gaps = 29/1947 (1%) Strand=Plus/Plus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| || ||||| | | ||| || | | | | ||||| || || || Sbjct 10503452 TTCTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTG 10503511 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | || || ||||| |||| || || || ||||| || || ||||| |||| || Sbjct 10503512 ACAATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 10503571 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 10503572 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGCGCCAGCAGC 10503631 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 | || || || | |||| | | | ||| || || || || | | ||| | |||||| Sbjct 10503632 AGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGG 10503691 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 53384 || | ||| | | | || || || || || ||| || ||| | Sbjct 10503692 TCGGTCGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAGC 10503749 Query 53385 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 53444 | | || || ||||| || || || | || || || || || ||||| | || Sbjct 10503750 CCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGG 10503809 Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 ||| || ||||| |||||||||| | || || || ||||| | || || || | Sbjct 10503810 CGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAACG 10503869 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 | | | || || || ||||| || | || || || || || ||||| || || | Sbjct 10503870 GGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGT 10503929 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | | ||| || || | |||||||| |||| || || || || || || || || || | Sbjct 10503930 GGCGCTTGTTGGAAGTCTCAGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGATCTTGT 10503989 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCA- 53683 |||||||| | |||||||| ||| || ||| || || || || |||| Sbjct 10503990 TGAGGTTTTTCACAATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAA-GTCCGC 10504048 Query 53684 TCTA---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTA 53740 ||| | || ||||||| | || || || ||||| || || ||||| ||||| | Sbjct 10504049 TCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTC- 10504107 Query 53741 GCATCC--GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 53798 | | | | || | | | ||| ||||| || || || ||||||||||| || | | Sbjct 10504108 -CTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGT 10504166 Query 53799 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTT 53858 | || || || ||||| ||| || || ||||| || || ||| | || || || |||| Sbjct 10504167 TCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTT 10504226 Query 53859 CAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATC 53918 | ||||||| || || || || | ||||| | ||||| | | || || Sbjct 10504227 CGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTTCACTC 10504286 Query 53919 TCTTTTCTCTTTCGTATA--GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTC 53976 || ||| | || ||| ||||| | || || ||||| |||||||| | ||| Sbjct 10504287 TCCCTTCCTTCTCATATTTGGTGTAGAGCTTC--TCGAACTCCTCTCCCCAGCACTCGTC 10504344 Query 53977 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 54036 || |||||||| || ||||||||||| ||||| || || || ||||| || Sbjct 10504345 CAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTT 10504404 Query 54037 CATAAAGAGATCAGGAATCCA-AAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 54095 ||| || || ||||| ||||| ||| || ||| || ||||||| ||| || ||||| | Sbjct 10504405 CATGAACAGGTCAGGGATCCACAAGGCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCT 10504463 Query 54096 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 54155 ||||||| ||||| || || || ||||| | | | || | ||||| || |||| || Sbjct 10504464 TTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCTCCAGGT 10504523 Query 54156 ATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 54215 | |||| | | || || | ||||| || ||||| || | ||| | ||||||||| | Sbjct 10504524 ACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGT 10504583 Query 54216 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 54275 | |||||||||| ||| || | | || ||||| || ||||| || | ||| |||| Sbjct 10504584 TGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGC 10504643 Query 54276 TTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335 |||| | | || || || | | | |||||||| || || || || || | Sbjct 10504644 TTCCCGTCGATCGGATGCAGCTCACCGCCACGCCTATCCCGCCAGCGGACTTGGAAATGA 10504703 Query 54336 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 54395 || || | || | || || |||||||| || || || || ||| ||||| || | Sbjct 10504704 GCGCACACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCA 10504763 Query 54396 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 | || || || |||| || | || | || || || || || | ||| ||||| |||| Sbjct 10504764 GGAAGCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGT 10504823 Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 | || ||||| || || || || || ||||| ||||||| || | ||| || || | Sbjct 10504824 GGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCC 10504883 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 ||||| || || | || | ||| | ||||||||| |||| || | | || || Sbjct 10504884 CGTGAATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGT 10504943 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 | || ||||||| |||||| |||| ||| || || || || ||||||| ||||| | Sbjct 10504944 TGATCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAAAAAT 10505003 Query 54636 CTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGG 54695 ||| |||||||| || |||||||| ||||| | || | || | || | | Sbjct 10505004 CTCTGTCGTAAATGATGGAGGAGTTGAGGCGGTCCTTGTTTTCCATGACGATGTCGAGCG 10505063 Query 54696 TAATACTT-GAAATAATCGGAGAAT---GTTTCCCATTTTTAGGATTGACATAGTTAAAT 54751 | | ||| || || || ||||| | |||| || ||| ||||||||| || Sbjct 10505064 T-CTGCTTGGAGATCATGGGAGAGTGGCGTTT---GTTCAGAGGGTTGACATAGGCGAAC 10505119 Query 54752 AAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 54811 | |||| |||||| || || || | || || || || || || || || || ||||| Sbjct 10505120 AGGTCCTCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTATGCAGGTTGGAGACGGCA 10505179 Query 54812 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 54871 || || ||||| || ||||| || || || |||| || || ||||| || || || Sbjct 10505180 ATCCTCGCGGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGGGTGGCCGCGATCTCC 10505239 Query 54872 GCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 54931 || | || ||||| | || || || || || || | || | || || || |||||| Sbjct 10505240 GCCGCTAGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAGCCCTGTATCACCTTC 10505299 Query 54932 ATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AAT 54990 || | || | | ||||| | | || | ||| | ||| || || || |||| || Sbjct 10505300 ATGGTGATCTGAGCCGGATCCACAAAGTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGAT 10505358 Query 54991 ACGAGATGTGATTTTATCAAACATGAC 55017 || || |||||||||||||||||||| Sbjct 10505359 GCGGGAGGTGATTTTATCAAACATGAC 10505385 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||| | || ||||| || || ||||| || | || || || |||||||| | Sbjct 10503159 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATATGGATGT 10503218 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || || || || |||||||||||||| | |||||| ||||| || | | |||| Sbjct 10503219 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 10503278 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043 | || | |||||||||| |||||||| | |||| | ||| ||||| Sbjct 10503279 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGATCATCTGG 10503327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721414462000