Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 163 3e-35 seq23 134 1e-26 seq7 127 2e-24 >seq3 Length=27041879 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || ||||| ||||| || |||||| | || || ||| ||| | Sbjct 11045066 ATGCAGATCTTCGTAAAGACCCTCACTGGCAAGACAATCACCCTGGAGGTGGAACCCAGC 11045007 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||||| | || ||||||||||||||| | ||||| Sbjct 11045006 GACACCATTGAGAACG-TCAAGGCCAAAATCCAGGATAAAGAGGGCATCCCCCCTGACCA 11044948 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 11044947 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 11044888 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| || |||| || || || || | || ||||||| ||| Sbjct 11044887 CATCCAGAAAGAATCCACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGC 11044839 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || ||||| ||||| ||||||||||||||| | || || || || Sbjct 11047080 AAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCC 11047021 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | | | |||| | |||| || || | || || |||||||||||| | || Sbjct 11047020 AGTGATACCATTGAGAACGTT-AAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGA 11046962 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || || || |||||||| || | |||||||| |||||| Sbjct 11046961 CCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 11046902 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||||||| |||| || || || Sbjct 11046901 CAACATCCAGAAGGAGTCCACCCTTCACCT 11046872 >seq23 Length=24361341 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| ||||| || || || |||||| | || || || || Sbjct 2608923 AAGATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACTATCACCCTGGAGGTGGAGCCC 2608982 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | | | |||| | |||| ||| |||| || ||||| ||||| || | || Sbjct 2608983 AGTGATACCATTGAGAACG-TGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGA 2609041 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || |||||||||||||| || | |||||||| ||||| Sbjct 2609042 CCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTA 2609101 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| ||||||||||| |||| || || || || | ||| ||||||| || Sbjct 2609102 CAACGTCCAGAAGGAGTCCACCCTCCACCTGGTTCTCCGCCTGAGGGGAGG 2609152 >seq7 Length=23593460 Score = 127 bits (140), Expect = 2e-24 Identities = 103/122 (84%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||||||||| ||| | ||| |||||||| | |||| ||| | |||||| | Sbjct 3930611 AGGTGGACCTGTCCAAAGACCTGCAGC-ACTGGGAGTCCCTGAAGGACGAGGAGCGCTAC 3930669 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 3930670 TTCATCTCCCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 3930729 Query 116804 GT 116805 || Sbjct 3930730 GT 3930731 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 ||||||||||||| || || ||||| ||||||| || || ||||||||||| || | Sbjct 3931200 TGGTGGCCTTCGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCT 3931259 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| |||||||| ||||| |||||||||||||||||| | | | Sbjct 3931260 GGCTGAAGAAGAGAGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCCGAG 3931319 Query 117162 ACGAGG 117167 |||||| Sbjct 3931320 ACGAGG 3931325 Score = 105 bits (116), Expect = 7e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||||||||||||| | ||||| |||| ||||||||||| || Sbjct 3930811 GGTGGAGCGCTTCACGCAGGAGGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGCTTCCA 3930870 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||||||||||||||| | ||||| || ||||| Sbjct 3930871 GATCGCCATGGAGAACATCCACTCTGAGATGTA 3930903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219038994000