Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq10 138 1e-27 seq3 107 2e-18 seq23 98.7 9e-16 >seq10 Length=32721116 Score = 138 bits (152), Expect = 1e-27 Identities = 464/707 (66%), Gaps = 24/707 (3%) Strand=Plus/Plus Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 ||| ||| |||| || ||||||||||| || ||||| || || | |||||||||||| Sbjct 10503560 GTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATG 10503619 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 ||||| || || ||| || ||||||| ||| || || || || ||| Sbjct 10503620 GGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTC 10503679 Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454 |||||||| || || || | | || | ||||| | | | || || | || Sbjct 10503680 CAGTCCCAAAG---GTCGG-----TCGGCGTC-TTCTC--CCACAT-GTCGT---ACTGG 10503724 Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514 | || ||| |||| || || | || ||||| || ||||| ||| | ||| Sbjct 10503725 AGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCG 10503784 Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTTGAC 133573 ||||||||||| ||||||| ||||| ||| ||||| || ||| || || ||||| Sbjct 10503785 AGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGAT-GTTGA- 10503842 Query 133574 GAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAA 133631 | | ||| || ||| || ||| | | | || || | || | || |||||||||| | Sbjct 10503843 GCAGCTGAGCTTCGGGACTTTCGAACGGG-TGCCGCATCAGGATGAAGGCGTCGGCCAGA 10503901 Query 133632 CCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTG 133691 ||||| | ||||| ||||| || | || || ||| |||| | || | Sbjct 10503902 CCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCAGCTTCAGGAACC 10503961 Query 133692 GGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGT 133751 || |||| ||||| |||||||||||||||||| || || || | || || | Sbjct 10503962 GGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACAATTACCTTGGTGACGGAG 10504021 Query 133752 TTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATA 133811 |||| |||| || ||| || | ||| |||| || |||||| ||| || Sbjct 10504022 GCCAGCTTCTTGAAGTCGAAAGTCC--GCTCTGGCGT-GACGTACATGTTGAGGGCGATG 10504078 Query 133812 CTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAG 133871 ||| || || || |||||| ||||| || | | |||| || | ||| | |||| Sbjct 10504079 GAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAG 10504138 Query 133872 AGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCC 133931 ||||||||||| ||||||||||||| || | || ||||| |||||| ||| Sbjct 10504139 AGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCC 10504198 Query 133932 TTGTATAGCATGTACGGCCCGCCGGTTTCGACGTTGGTCTCGACGAT 133978 ||||| |||||||| || ||||||||| | || ||||| ||| Sbjct 10504199 TTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGAT 10504245 >seq3 Length=27041879 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| || ||||| ||| || ||||| ||||| Sbjct 11046881 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 11046940 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | |||||| || || || ||||||||||| || || || ||| Sbjct 11046941 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTA 11047000 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || || ||| ||||| | ||| | ||||||||||| || ||| Sbjct 11047001 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTT 11047060 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 11047061 TTCACAAAGATCTGCAT 11047077 >seq23 Length=24361341 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || | |||||| || || ||||| ||| || Sbjct 2609134 ACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGGCCATCTTCC 2609075 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| |||| || | |||||| || ||||| ||||| || || || | Sbjct 2609074 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGA 2609015 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | || | ||| || || ||| ||||| | ||| | || || Sbjct 2609014 ATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATAGTCTTC 2608955 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||||||||| Sbjct 2608954 CCAGTGAGGGTTTTCACGAAAATCTGCAT 2608926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830267817300