Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3 125 5e-24 >seq3 Length=27041879 Score = 125 bits (138), Expect = 5e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||||||| ||| | || |||| |||||| || || || Sbjct 11046887 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 11046946 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||||||||| ||| | || |||||| || ||||| ||| | | Sbjct 11046947 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTTC 11047006 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||||||||||||||| ||||||||| Sbjct 11047007 TCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACA 11047066 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 11047067 AAGATCTGCATC 11047078 Score = 111 bits (122), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| ||||||||||||||||| ||| | || |||| ||||||||| || || Sbjct 11044875 TTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 11044934 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGA 34315 ||||||| ||||||||| ||| | || ||| || || || ||||| ||| | Sbjct 11044935 GATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATC--CTGGATTTTGGCCTTGACG 11044992 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | || | ||| | | ||| || |||| ||||| || ||||| ||||| || || Sbjct 11044993 TTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTT 11045052 Query 34376 ACAAAGATCTGCAT 34389 || ||||||||||| Sbjct 11045053 ACGAAGATCTGCAT 11045066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071901564000