Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq12 196 3e-45 >seq12 Length=29398440 Score = 196 bits (216), Expect = 3e-45 Identities = 304/433 (70%), Gaps = 6/433 (1%) Strand=Plus/Plus Query 107694 AGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAA 107753 ||| | || || ||| | || |||||||| ||||| || ||| | || ||||||||||| Sbjct 9203679 AGTGAGGAGGAACTAAATTTTCCCATTGCATACTCCATAGTGATACACGAGAAGATTGAG 9203738 Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 | |||||||| || | | | | | ||||| || |||||||| ||||||||||| | Sbjct 9203739 ATGTTTGAACGACTCTTACAATCTATTTATGCTCCACAGAACATCTACTGTGTCCATATT 9203798 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCC 107873 || ||||||| | | |||| | |||| || ||| || |||||||||| ||| Sbjct 9203799 GACCTGAAGTCTTCCCTGTCTTTTCACAAGGCTGTGAAGAAAATAGTTTCCTGCTTTCCC 9203858 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 ||||| || | |||||||| || | || || ||||| || ||||||||||| || Sbjct 9203859 AATGTTTTTGTAGCCAGTAAATTAGAAAGTGTTGTGTATGCTTCATGGTCCAGAGTACAG 9203918 Query 107934 GCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTC---AGTGCCATGGAAGTACTTA 107990 || || |||||||| ||| |||| |||| || ||| ||| | |||| ||| | Sbjct 9203919 GCAGATCTGAACTGCATGAAAGATCTGCTGCA---CTCTGAAGTTCAGTGGAGATACCTT 9203975 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTC 108050 ||||||| || ||||||||||| ||||| || ||||| |||||||| ||| || Sbjct 9203976 TTGAATACCTGTGGGACAGACTTTCCCATTAAAACCAACAGGGAGATGGTGAAGGCTCTG 9204035 Query 108051 AAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaT 108110 || | | || || | |||||| |||| |||| | | || ||||| ||| | Sbjct 9204036 AAAGTCCTTAATGGGAGGAACAGCTTGGAAACTGAAGCCACCAGTGCCTCCAAGAAAGCT 9204095 Query 108111 CGCTGGAAATACC 108123 |||||| | |||| Sbjct 9204096 CGCTGGCAGTACC 9204108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348268693886850