Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq10 168 1e-36 >seq10 Length=32721116 Score = 168 bits (186), Expect = 1e-36 Identities = 638/1000 (64%), Gaps = 32/1000 (3%) Strand=Plus/Minus Query 248437 GACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGT 248496 || |||||| | || ||| | || || |||||| | | |||||| ||||||| || Sbjct 10505403 GATGGGCGCCAGGAGCGCGTCATGTTTGATAAAATCACCTCCCGCATCCAGAAGCTTTGC 10505344 Query 248497 TATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGCCCAGAAAGTTATTTCGGGC 248556 || || ||| | || |||| || |||| | ||| || ||| || || |||| Sbjct 10505343 TACGGCCTGAACCCGGACTTTGTGGATCCGGCTCAGATCACCATGAAGGTGATACAGGGC 10505284 Query 248557 GTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCTGCGGAGACGGCGGCGTAC 248616 | |||| ||| || || || || || ||||| |||| ||||||| ||||| | Sbjct 10505283 TTGTACAGCGGCGTCACCACCGTGGAGCTAGACACGCTAGCGGCGGAGATCGCGGCCACC 10505224 Query 248617 ATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTT 248676 || ||| ||||||||||||| | | ||||||| |||||| |||||||| | || Sbjct 10505223 CTGACGACCAAACACCCCGACTACGCCATCCTGGCCGCGAGGATTGCCGTCTCCAACCTG 10505164 Query 248677 CACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCTGACCTACATGCCTATGGGA-- 248734 || || || || || || |||| ||| |||| ||||| ||||||| | Sbjct 10505163 CATAAGGAGACCAAGAAGGTGTTCAGCGAGGTGATGGAGGACCTGTTCGCCTATGTCAAC 10505104 Query 248735 ----TGG-----------TCGCCGATGACGTCCACAC-------CGTCAT--TCA-GGAC 248769 || || || |||| |||| | || ||| ||| ||| Sbjct 10505103 CCTCTGAACAAACGCCACTCTCCCATGATCTCCAAGCAGACGCTCGACATCGTCATGGAA 10505044 Query 248770 AACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTT 248829 ||| | ||| ||| || | | || |||| || |||||| ||| | ||||| Sbjct 10505043 AACAAGGACCGCCTCAACTCCTCCATCATTTACGACAGAGATTTTTCCTACAACTTCTTC 10504984 Query 248830 GCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGA 248889 | ||||| || |||||| || || || || || || | || || | | || ||| Sbjct 10504983 GGCTTCAAGACTCTGGAGCGTTCCTACCTGCTGAAGATCAACGGGAAAGTGGCCGAGCGA 10504924 Query 248890 ATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTG 248949 ||||||||| | ||| | ||| | || ||||||||| | ||||| || || Sbjct 10504923 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATTCACGGGCGAGACATCGACGCCGCC 10504864 Query 248950 CTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTC 249009 ||||||| |||| | || || ||| | || || ||| | ||||| |||||| Sbjct 10504863 GTCGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTC 10504804 Query 249010 AACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGAC 249069 |||||||| ||| | |||||| | ||||| || || |||||| | |||||| Sbjct 10504803 AACGCCGGGACCAACCGGCCGCAGCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGACGAC 10504744 Query 249070 TCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGC 249129 |||| ||||| || ||||| || || ||| ||| ||||| || | ||| ||| Sbjct 10504743 AGCATCGAAGGCATCTACGACACCCTGAAGCAGTGTGCGCTCATTTCCAAGTCCGCTGGC 10504684 Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189 || || || | | || | ||||||| ||| ||| |||||| ||| || || Sbjct 10504683 GGGATAGGCGTGGCGGTGAGCTGCATCCGATCGACGGGAAGCTACATCGCAGGCACCAAC 10504624 Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249 || | | || | || || | || || | | |||||| ||| | || Sbjct 10504623 GGCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAACACCGCTCGGTACGTC 10504564 Query 249250 AACCAGGCCGGGCGCCGAAAG----GGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGC 249305 |||||| | ||| | | || ||| | ||||||||||| |||| |||||| Sbjct 10504563 GACCAGGGC-GGCAACAAGAGACCCGGGGCCTTCGCCATGTACCTGGAGCCATGGCACTT 10504505 Query 249306 CGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCG 249365 ||| | || || |||||||| |||| ||||||| || || ||| |||||| | Sbjct 10504504 CGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAG 10504445 Query 249366 TGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 ||||| ||||||| | ||||| || | ||| |||||||| Sbjct 10504444 AGACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATG 10504405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766056059200