Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3 122 7e-23 seq23 98.7 8e-16 >seq3 Length=27041879 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45130 CAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAG 45189 || ||| || ||| ||||||||| |||||||||||| ||| ||| | || ||||| Sbjct 11046871 CAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAG 11046930 Query 45190 TTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAAT 45249 || |||||||| || |||| || ||| ||||| || || | |||||||| ||| || Sbjct 11046931 CTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT 11046990 Query 45250 TTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCC 45309 || |||||| | | | | | || | ||||||||||| ||| || || ||||| Sbjct 11046991 CTTGGCCTTAACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCC 11047050 Query 45310 CGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 || || || ||||||||||| ||||| |||| Sbjct 11047051 GGTGAGGGTTTTCACAAAGATCTGCATCTTGC 11047082 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | || | ||| || ||| || ||||| |||||||||||| Sbjct 11044839 GCCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 11044898 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || || || || || || | || ||| ||||| || || Sbjct 11044899 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGG 11044958 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||| || ||| ||||| ||| || | | | | |||| | ||||| Sbjct 11044959 GATGCCCTCTTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCAC 11045018 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||| || |||||||| || || ||||| || ||||| ||||| Sbjct 11045019 CTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCAT 11045066 >seq23 Length=24361341 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| | ||||||||| ||| ||| | || ||| Sbjct 2609134 ACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGGCCATCTTCC 2609075 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || |||| || ||| ||||| ||||| | || || || ||| | Sbjct 2609074 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGA 2609015 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | | || | ||||||||||| ||| || ||||| Sbjct 2609014 ATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATAGTCTTC 2608955 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || || || || ||||| || || ||||| || Sbjct 2608954 CCAGTGAGGGTTTTCACGAAAATCTGCATCTT 2608923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075079625525