Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq10 462 2e-125 seq3 127 2e-24 >seq10 Length=32721116 Score = 462 bits (512), Expect = 2e-125 Identities = 1074/1609 (67%), Gaps = 31/1609 (2%) Strand=Plus/Plus Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGAT 22425 ||||| ||| ||||| || || | | || || ||| |||||||||| ||| Sbjct 10503421 CTGGATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 10503480 Query 22426 GGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCG 22485 | |||| ||| |||| || ||| |||| || | || ||||| ||||||| || | Sbjct 10503481 CTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCT 10503540 Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545 ||| ||| |||||| ||| ||| |||| || || ||||| ||||| ||||| || Sbjct 10503541 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 10503600 Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT 22605 ||| || || || ||||| ||||||| ||| || ||| |||| |||||| || || Sbjct 10503601 GGTGGAGGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGAT 10503660 Query 22606 TTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATC 22665 || ||| |||| | ||||||||| || |||| ||||||| || |||||||| || Sbjct 10503661 CTTTTCCTTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTC---TTCTCCCACATGTC 10503717 Query 22666 GTATTGCAACACGCCGCGACTCGCCGGGCT-GCCTTCGTACGTTTCGTACGGACCATATA 22724 ||| || | | ||| || | ||||| ||| |||||||| ||||| || || | Sbjct 10503718 GTACTGGAGGATGCCCTTGCT-GACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCG-AGC 10503775 Query 22725 TC-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTT-- 22781 || ||||| || |||||||| ||||||| ||| ||| || || ||||||||||| | Sbjct 10503776 TCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGG 10503835 Query 22782 -TCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCG 22840 | ||| || | || ||| || |||||| |||| ||||||| | ||| ||| Sbjct 10503836 ATGTTGAGCAGCTGAGCTTCGG-GA--CTTTCGAACGGGTGCCGCATCAGGATGAAGGCG 10503892 Query 22841 TCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCC 22900 || |||| |||||| ||||| || |||||||| | || | || || | || Sbjct 10503893 TCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCAGCT 10503952 Query 22901 TCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATT--- 22957 || || | || || | || ||||| | |||| | |||| |||||||| Sbjct 10503953 TCAGGAACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTT---TTCACAATTACC 10504009 Query 22958 TTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTTGTTG 23017 || || | | |||||| || | | | | || || ||||| Sbjct 10504010 TTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTG 10504069 Query 23018 ACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATT 23077 | |||||| ||||| || ||||| |||||||||||||| ||| |||||||| || | Sbjct 10504070 AGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACC 10504129 Query 23078 TCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTG 23137 || || || || ||||| ||||| || ||||||| || ||||||||| || || ||| Sbjct 10504130 TCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTG 10504189 Query 23138 CACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCT 23197 || | ||||||||||||||||| || || || || ||| ||| ||||||||||| || Sbjct 10504190 CAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCG 10504249 Query 23198 CGCCACATAGTCTGAGCGTGAACACGTCGCACGT-AC-CTGCCTTCTTCCTCGTACTTTT 23255 ||| | ||| || | ||| | | | | || || ||||| | ||| || || Sbjct 10504250 TACCAGAGCTGCTGCGCCT--TCACCACCCTCTTCACTCTCCCTTCCTTCTCATATTTGG 10504307 Query 23256 GGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGAC 23315 ||| | | || || || | || | || ||| |||| || || | | | |||| Sbjct 10504308 TGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGAC 10504367 Query 23316 ACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATA 23375 |||| | ||| || | || || | |||| || || || || ||||| | Sbjct 10504368 ACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACA 10504427 Query 23376 GAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCA 23435 |||||||| || || | ||| | | |||||| || || |||||||| |||| |||| Sbjct 10504428 AGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCA 10504487 Query 23436 AAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| |||||||| ||||| ||||| ||||| | ||| || || || ||||||| Sbjct 10504488 GGAAGTCGAACACGTCGAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCT 10504547 Query 23496 TATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGA 23555 | ||||||||||| |||||||| || || ||||||||||| ||||| ||||||||||| | Sbjct 10504548 TGTTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCA 10504607 Query 23556 GACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTT----TTGCTCGAACGTTG 23611 |||||||| |||| ||| || | | | ||| | | ||| | | | Sbjct 10504608 ACCCGTTGGAGTTGCCGTTGGTGCCTGCGA----TGTAGCTTCCCGTCGATCGGATGCAG 10504663 Query 23612 TGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTG 23671 || | ||||| || || | || || || || | ||| || || ||||| ||| Sbjct 10504664 CTCACCGCCACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGCACACTGCTTCAGGGTG 10504723 Query 23672 TCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGC 23731 ||||||||||| ||||||||||| || || | |||| || ||| || |||| ||| Sbjct 10504724 TCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGC 10504783 Query 23732 GCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGAC 23791 | | || |||| ||| || ||||| |||||| || || | | |||| Sbjct 10504784 GGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGAC 10504843 Query 23792 ATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACG 23851 | || ||||| || |||| |||||| || ||||| ||||| || || | | || Sbjct 10504844 AGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGAATCCCAACCGACACC 10504903 Query 23852 CGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAA 23911 | ||| | ||||| || |||| |||| || ||||| || || | ||| || ||| Sbjct 10504904 CTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAA 10504963 Query 23912 CGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 || | || || || || || || ||| ||| ||| || | |||| Sbjct 10504964 CGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAAAAATCTCTGTCGT 10505012 >seq3 Length=27041879 Score = 127 bits (140), Expect = 2e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| ||||| ||||| || ||||| || || || |||||||| |||| || || Sbjct 15255843 CACCTCATCTTTACTTGTGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGT 15255902 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||| | || | ||||| | ||||||||||||||||||||||| Sbjct 15255903 GCCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGT 15255962 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||| ||||||||||||||| || Sbjct 15255963 ACCCGTCTCTGTCTGCGACTCGATGATGGC 15255992 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || ||||||| || || || ||||| | || ||||||| || | ||| | Sbjct 15256310 TTTCCACTCGCTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTC 15256369 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||| ||||| || |||||||| |||| |||||||| || |||||||| ||||||| Sbjct 15256370 TCTGCTCTTCTTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCC 15256429 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || | || || || ||||||| Sbjct 15256430 ACGGCTCCAGGTACACAGAGAAGGCCCCTGGTCTCT 15256465 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| || || ||||| || |||||| | || || ||||| | Sbjct 11045066 ATGCAGATCTTCGTAAAGACCCTCACTGGCAAGACAATCACCCTGGAGGTGGAACCCAGC 11045007 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | ||| ||| || || ||| | || || |||||| Sbjct 11045006 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAAGAGGGCATCCCCCCTGACCAG 11044947 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||| ||| ||||||| || || ||| || ||| Sbjct 11044946 CAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 11044887 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || |||||||| || || || || || || | |||||||| || Sbjct 11044886 ATCCAGAAAGAATCCACCCTCCACCTTGTTCTCCGTCTGAGGGGTGG 11044840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766260698000