Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10 448 6e-121 seq7 87.8 2e-12 >seq10 Length=32721116 Score = 448 bits (496), Expect = 6e-121 Identities = 1295/1981 (65%), Gaps = 35/1981 (2%) Strand=Plus/Plus Query 62294 CTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62353 ||| |||||||| | | | || | | | ||||| ||||| || ||||| | | Sbjct 10503421 CTGGATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 10503480 Query 62354 CTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCT 62413 ||| || | | | | ||||| || ||||| || | ||||| ||||| |||| || || Sbjct 10503481 CTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCT 10503540 Query 62414 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62473 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 10503541 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 10503600 Query 62474 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62533 || || || || ||||| || |||| || | || || || | |||| | | | ||| Sbjct 10503601 GGTGGAGGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGAT 10503660 Query 62534 TTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG-------TACAACANNNNNNN 62586 || || || || | | ||| | |||||| || | ||| | | ||| Sbjct 10503661 CTTTTCCTTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTCTTCTCCCACATGTCG-- 10503718 Query 62587 NNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTT 62646 || || || || || || ||| || ||| || | || || || || || || Sbjct 10503719 -----TACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA 10503773 Query 62647 CCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCT 62706 || | || || | || || ||||| | || ||| || ||||| || ||||||| Sbjct 10503774 GCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCT 10503833 Query 62707 TCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGT 62766 | || || || ||||| || || || || || | | || || || |||| Sbjct 10503834 GGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGT 10503893 Query 62767 CCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTT 62826 | || | || || || || || ||||| || || || | ||| || || | ||||||| Sbjct 10503894 CGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCAGCTT 10503953 Query 62827 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 62886 | |||| || || || || || || || || || ||||| ||| | |||||||| ||| Sbjct 10503954 CAGGAACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACAATTACCTTGG 10504013 Query 62887 CCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATG 62943 || ||| || || || || || ||| | || ||||||| | | Sbjct 10504014 TGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGG 10504073 Query 62944 CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTC 63001 | | || ||||| || || ||||| ||||| | | | | | || | | | ||| Sbjct 10504074 CGATGGAGGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTC 10504131 Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061 ||||| || || || |||||||| || || | || || || || ||||| ||| || Sbjct 10504132 CGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCA 10504191 Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121 || ||||| || || ||| | || || || ||||| |||| || || || || || | Sbjct 10504192 AGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTA 10504251 Query 63122 CCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTAT 63180 ||||| | || | ||||| | | || ||||| ||| | || ||| || | Sbjct 10504252 CCAGAGCTGCT-GCGCCTTCACCACCCTCTTCACTCTCCCTTCCTTCTCATATTTGGTGT 10504310 Query 63181 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACA 63240 | | |||||||| |||||||| | ||||| | |||||| || ||||||| Sbjct 10504311 AGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACA 10504370 Query 63241 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300 |||| ||||| || || || ||||| ||||| || || ||||| ||||| | | Sbjct 10504371 TCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGG 10504430 Query 63301 C-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359 | || ||| || ||||| | ||| || ||||| |||||||| ||||| || || || ||| Sbjct 10504431 CGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGG 10504489 Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63419 || | | | || | ||||| || |||| ||| ||||| | | || || | ||| Sbjct 10504490 AAGTCGAACACGTCGAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTG 10504549 Query 63420 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63479 || || ||||| || | ||| | ||||||||| || |||||||||| ||| || | | Sbjct 10504550 TTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAAC 10504609 Query 63480 CCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATT 63539 ||||| || | || ||||| || | ||| |||| ||| | | || || || | Sbjct 10504610 CCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACC 10504669 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63599 | | ||||| || || || || || || | || || | || | ||||| ||| Sbjct 10504670 GCCACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGCACACTGCTTCAGGGTGTCGTAG 10504729 Query 63600 ATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659 |||||||| ||||| || || ||||| || || || || || |||| || | || Sbjct 10504730 ATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGG 10504789 Query 63660 GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63719 | || || || || || | ||| ||||| ||||| || ||||| || || || || || Sbjct 10504790 TTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGG 10504849 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63779 ||||| ||||| | || | ||| || || | ||||| || || | || | ||| Sbjct 10504850 TTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGAATCCCAACCGACACCCTCATG 10504909 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 | ||||||||| |||| || | | ||| ||| || |||| || |||||| ||| Sbjct 10504910 AGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCC 10504969 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 63899 | ||| || || || || ||||||| ||||| |||| |||||||| || || ||| Sbjct 10504970 AGAGTCTTGAAGCCGAAGAAGTTGTAGGAAAAATCTCTGTCGTAAATGATGGAGGAGTTG 10505029 Query 63900 AGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGAAT- 63957 || ||||| | || | || || || | || | ||| || || || ||||| | Sbjct 10505030 AGGCGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTGCTTGGAGATCATGGGAGAGTG 10505088 Query 63958 --GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 64015 |||| || ||| || |||||| ||| | ||||||||||| || || || | Sbjct 10505089 GCGTTT---GTTCAGAGGGTTGACATAGGCGAACAGGTCCTCCATCACCTCGCTGAACAC 10505145 Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075 || || || ||||| || || || || | ||| || || ||||| || ||||| || || Sbjct 10505146 CTTCTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTC 10505205 Query 64076 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64135 || |||| || || ||||| || || || || || || ||||| | || || || Sbjct 10505206 GGGGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCTAGCTCCACGGT 10505265 Query 64136 TGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATG 64195 || || || | || | || || || |||||||| | || | | ||||| | | Sbjct 10505266 GGTGACGCCGCTGTACAAGCCCTGTATCACCTTCATGGTGATCTGAGCCGGATCCACAAA 10505325 Query 64196 ATCCGTGTTTAAGCCATAGCACAATTTTCT-AATACGAGACGTGATTTTATCAAACATGA 64254 |||| ||| | ||| ||||| || |||| || || || ||||||||||||||||||| Sbjct 10505326 GTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCAAACATGA 10505384 Query 64255 C 64255 | Sbjct 10505385 C 10505385 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||| | || ||||| || || ||||| || | || || || |||||||| | Sbjct 10503159 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATATGGATGT 10503218 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| || || || || |||||||||||||| | |||||| ||||| || | | |||| Sbjct 10503219 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 10503278 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 | || | |||||||||| |||||||| | |||| | ||| ||||| Sbjct 10503279 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGATCATCTGG 10503327 >seq7 Length=23593460 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||||| || || | ||||| || || || |||||||| ||||| | ||| | Sbjct 3931325 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 3931266 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| ||||| || || || ||||||||||| || || || || |||| Sbjct 3931265 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCGAAGG 3931206 Query 33724 CAATAAGTCTCTCTCC 33739 | | | ||||||||| Sbjct 3931205 CCACCACTCTCTCTCC 3931190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817403182000