Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10 437 1e-117 >seq10 Length=32721116 Score = 437 bits (484), Expect = 1e-117 Identities = 1292/1978 (65%), Gaps = 29/1978 (1%) Strand=Plus/Plus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 ||| |||||||| | ||| || | | | ||||| ||||| || ||||| | | Sbjct 10503421 CTGGATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 10503480 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 ||| || | | | | ||||| || || || || | || || ||||| |||| || || Sbjct 10503481 CTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCT 10503540 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 10503541 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 10503600 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 || || || || ||||| || |||| || | || || || | |||| | | | ||| Sbjct 10503601 GGTGGAGGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGAT 10503660 Query 65327 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 65386 || || || || | | ||| | |||||| || | ||| | | Sbjct 10503661 CTTTTCCTTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGG--CGTCTTCTCCCACATGTCG 10503718 Query 65387 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 65444 | || || || || || ||| || ||| || | || || ||||| || || || Sbjct 10503719 TACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCT 10503778 Query 65445 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 65504 | || || || || || ||||| | || ||| || ||||| |||||||||| | Sbjct 10503779 GCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATG 10503838 Query 65505 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564 || || || ||||| | || || || || | | || || || ||||| || Sbjct 10503839 TTGAGCAGCTGAGCTTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCC 10503898 Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624 | || || || || || ||||| || || || | ||| || || | |||||||| ||| Sbjct 10503899 AGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCAGCTTCAGGA 10503958 Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 65684 | || || || || || || || || || ||||| ||| | |||||||| ||| || Sbjct 10503959 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACAATTACCTTGGTGACG 10504018 Query 65685 TCCTTCAGTTTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACA 65741 ||| || || || || ||||| | || ||||||| | || | Sbjct 10504019 GAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATG 10504078 Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGC 65799 || ||||| || || ||||| ||||| | | | | | || | | | ||| |||| Sbjct 10504079 GAGGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTCCGTGC 10504136 Query 65800 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 65859 | || || || ||||||||||| || | || || || || ||||| ||| || || | Sbjct 10504137 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGT 10504196 Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 |||| || || ||| | || || || ||||| |||| || || || || || | ||||| Sbjct 10504197 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 10504256 Query 65920 -CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATA--GTGTATACA 65976 | || | ||||| | | || |||| ||| | || ||| ||||| | Sbjct 10504257 GCTGCT-GCGCCTTCACCACCCTCTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGC 10504315 Query 65977 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 66036 || |||||||| |||||||| | ||||| |||||||| || |||||||||| Sbjct 10504316 TTC--TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCA 10504373 Query 66037 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA-AAGAGCT 66095 | ||||| || || || ||||| ||||| || || ||||| ||||| ||| | Sbjct 10504374 AGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGT 10504433 Query 66096 ATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 66155 | ||| | ||||||| ||| || ||||| |||||||| ||||| || || || ||||| Sbjct 10504434 AGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 10504492 Query 66156 GCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 66215 | | | || | ||||| || |||| ||| ||||| | | || || | ||||| Sbjct 10504493 TCGAACACGTCGAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTG 10504552 Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || ||||| || | ||| | ||||||||| || |||||||||| ||| || | | || Sbjct 10504553 CCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCG 10504612 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 ||||| | || ||||| || | ||| |||||||| | | || || || | | Sbjct 10504613 TTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCC 10504672 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||||| || || || || || || | || || | || | || || |||||| Sbjct 10504673 ACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGCACACTGCTTCAGGGTGTCGTAGATG 10504732 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 66455 || || || || || ||| ||||| || || || || || |||| || | || | Sbjct 10504733 CCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTG 10504792 Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || || || || | ||| ||||| ||||| || ||||| || || || || || ||| Sbjct 10504793 GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTG 10504852 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || ||||| | || | ||| || || | ||||| || || | || | ||| | | Sbjct 10504853 TAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGAATCCCAACCGACACCCTCATGAGC 10504912 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 |||||||| |||| || | | || ||| || |||| || |||||| |||| | Sbjct 10504913 ATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAGA 10504972 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 66695 || || || || || ||||||| ||||| |||| |||||||| || |||||||| Sbjct 10504973 GTCTTGAAGCCGAAGAAGTTGTAGGAAAAATCTCTGTCGTAAATGATGGAGGAGTTGAGG 10505032 Query 66696 TTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAAT---G 66751 ||||| | || | || | || | || | ||| || || || ||||| | | Sbjct 10505033 CGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTGCTTGGAGATCATGGGAGAGTGGCG 10505091 Query 66752 TTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 66811 ||| || ||| ||||||||| ||| | ||||||||||| || || || | || Sbjct 10505092 TTT---GTTCAGAGGGTTGACATAGGCGAACAGGTCCTCCATCACCTCGCTGAACACCTT 10505148 Query 66812 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGG 66871 || || || || || || || || ||||| || || ||||| | ||||| || || || Sbjct 10505149 CTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGGG 10505208 Query 66872 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 66931 |||| || || ||||| || || || || || || ||||| | || || || || Sbjct 10505209 GTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCTAGCTCCACGGTGGT 10505268 Query 66932 TACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 66991 || || | || | || || || |||||||| | || | | ||||| | | || Sbjct 10505269 GACGCCGCTGTACAAGCCCTGTATCACCTTCATGGTGATCTGAGCCGGATCCACAAAGTC 10505328 Query 66992 AGTGTTTAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGAC 67048 | ||| | ||| || || || |||| || || || |||||||||||||||||||| Sbjct 10505329 CGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCAAACATGAC 10505385 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||| | || ||||| || || ||||| || | || || || |||||||| | Sbjct 10503159 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATATGGATGT 10503218 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| || || || || |||||||||||||| | |||||| ||||| || | | |||| Sbjct 10503219 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 10503278 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 65074 | || | |||||||||| |||||||| | |||| | ||| ||||| Sbjct 10503279 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGATCATCTGG 10503327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172594321000