Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq8 165 6e-36 >seq8 Length=25108055 Score = 165 bits (182), Expect = 6e-36 Identities = 225/310 (73%), Gaps = 8/310 (3%) Strand=Plus/Plus Query 91798 TCATTTCCCTGTCTTTTCCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACA 91857 ||||||||| || ||| ||| ||||||| |||| |||||| ||||| | | | || Sbjct 7788979 TCATTTCCCGACGTTCGCCTCCAAGGAGGACTGCAACGTCATCACTGACACAGCC-GCCA 7789037 Query 91858 A-CTGGAACAAAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGC 91916 | || || | || |||||||||||||| || ||||| || |||||||| || || |||| Sbjct 7789038 AGCTTGAGCGCAGCGGCTTCTACTGGGGCCCGTTGGGAGTGGAGGAGGCCCACCGCATGC 7789097 Query 91917 TGCGCAACTCGGCACTGGGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGT 91976 | |||| | | | |||||||||| || || || || ||| |||| ||||||||||| | Sbjct 7789098 TCCGCAGCGCCCCGCTGGGCAGCTACCTTATCCGCGACAGCCGGCAGAAGGACGTCTTTT 7789157 Query 91977 TCACGCTGTCGTATCACTCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAGGACA 92036 |||| ||||| |||||| || ||||||||||||||| | || || |||||| | Sbjct 7789158 TCACCCTGTCCTATCACGACAGGAAAGGACCCGTCAGTGTGCGCATCGACTACAAGCAGC 7789217 Query 92037 AGCAATTTTCCTTGGCTGGGAGCAAACAGAG---GTTTTCATCGGTCCTTCTCCTGTTGG 92093 || | || || |||| | |||| ||| | || || || || || ||| |||| Sbjct 7789218 AGAAGTTCTCTCTGGCCG---GCAACCAGCGCTCCTTCCCAACGCTCTTTGCCCTCTTGG 7789274 Query 92094 ACCATTACAT 92103 | ||||||| Sbjct 7789275 AGTATTACAT 7789284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356233491460075