Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq23 98.7 1e-15 seq3 82.4 8e-11 >seq23 Length=24361341 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/157 (76%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| |||||||| |||||| ||||||| | ||||| || ||||| ||||||||||| Sbjct 2609080 TCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTA 2609021 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCA 139727 || ||| | |||| || | |||| || | || || ||||||||||||| | ||| | Sbjct 2609020 TC-CTGAATCTTTGCCTTCAC-GTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGA 2608963 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | ||||| ||||| || ||||| Sbjct 2608962 TAGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2608926 >seq3 Length=27041879 Score = 82.4 bits (90), Expect = 8e-11 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| || ||| || |||| ||||| ||||| Sbjct 11046874 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 11046933 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || ||| ||||||| | ||||| || || || ||||| || || || ||| || Sbjct 11046934 CTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTT 11046993 Query 139681 TTGTTTTAGCTGTTC-CACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCG 139738 | ||| | |||| || || | || ||||||||||||| | ||| | || |||||| Sbjct 11046994 G-GCCTTAAC-GTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCG 11047051 Query 139739 GTCAACGTTTTTACGAATATTTGCAT 139764 || | ||||| || || || ||||| Sbjct 11047052 GTGAGGGTTTTCACAAAGATCTGCAT 11047077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063844980000