Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq10 459 4e-124 seq7 105 1e-17 seq5 87.8 3e-12 >seq10 Length=32721116 Score = 459 bits (508), Expect = 4e-124 Identities = 1304/1979 (66%), Gaps = 31/1979 (2%) Strand=Plus/Plus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 ||| |||||||| | ||| || | | | ||||| ||||| || ||||| | | Sbjct 10503421 CTGGATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 10503480 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 ||| || | | | | ||||| || || || || | || || ||||| |||| || || Sbjct 10503481 CTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCT 10503540 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || ||||| || | || | || || || || |||| || || || Sbjct 10503541 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 10503600 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || ||||| ||||| || |||| || | || || || | |||| | | ||| Sbjct 10503601 GGTGGAGGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGAT 10503660 Query 79206 TTTATCTTTTAG-AGATTCCCAATCCCAAAGATCAGACGG-GACAACATTCCAAAGATCA 79263 || || || || || |||| | |||||||| || | ||| | | | | ||| | || Sbjct 10503661 CTTTTCCTTCAGCAGCTTCC-AGTCCCAAAGGTCGGTCGGCGTCTTC-TCCCACATGTCG 10503718 Query 79264 TATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTT 79323 || || || || || || || || || || ||| || || || || || || | Sbjct 10503719 TACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCT 10503778 Query 79324 TCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTA 79383 |||| | || || || ||||| | || ||| || ||||| ||||| |||| | Sbjct 10503779 GCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATG 10503838 Query 79384 TTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 79443 ||||| || ||||| | || || || || | | || || || ||||| || Sbjct 10503839 TTGAGCAGCTGAGCTTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCC 10503898 Query 79444 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGA 79503 | || || || || || ||||| || || || | ||| || ||| | |||||||| ||| Sbjct 10503899 AGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCAGCTTCAGGA 10503958 Query 79504 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACA 79563 | || || || || || || || || || ||||| || | || ||||| ||| || Sbjct 10503959 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACAATTACCTTGGTGACG 10504018 Query 79564 TCCTTTAGTTTGAGAAAATCAAATCGTCCA-TCTA---TTACAAACATGTTCAACGCGAC 79619 || || || || || |||| ||| | || ||||||| | |||| Sbjct 10504019 GAGGCCAGCTTCTTGAAGTCGAAA-GTCCGCTCTGGCGTGACGTACATGTTGAGGGCGAT 10504077 Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATTTCAGTG 79677 || ||||| || || ||||| ||||| | | | | | || | | | || ||| Sbjct 10504078 GGAGGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTCCGTG 10504135 Query 79678 CAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 79737 |||||||| || ||||| ||||| || | || || || || ||||| ||| || || Sbjct 10504136 CAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCG 10504195 Query 79738 TCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 79797 ||||| || || ||| | || || || ||||| |||| || || || || || | |||| Sbjct 10504196 TCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAG 10504255 Query 79798 A-CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATT--GTGTATAT 79854 | | || | ||||| | | ||| |||| ||| | || |||| ||||| | Sbjct 10504256 AGCTGCT-GCGCCTTCACCACCCTCTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAG 10504314 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 || |||||||| |||||||| ||||| | |||||||| ||| ||||||||| Sbjct 10504315 CTTC--TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATC 10504372 Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCA-AAGAGC 79973 || ||||| || | || |||| ||||| || || ||||| ||||| ||| Sbjct 10504373 AAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCG 10504432 Query 79974 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033 || ||| || ||||||| ||| |||||||| |||||||| ||||| || || || ||||| Sbjct 10504433 TAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAA 10504491 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 | | | || | ||||| || |||| ||| ||||| | | || |||| ||||| Sbjct 10504492 GTCGAACACGTCGAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTT 10504551 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 || ||||| || | ||| | ||||||||| || |||||||||| ||| || | | || Sbjct 10504552 GCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCC 10504611 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||| | || ||||| || | ||| |||||||| | | || || || | | Sbjct 10504612 GTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGC 10504671 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||||| || || || || || || | || || | || | || || ||||| Sbjct 10504672 CACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGCACACTGCTTCAGGGTGTCGTAGAT 10504731 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 80333 ||| || ||||| || || ||||| || || || || || |||| || | || | Sbjct 10504732 GCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTT 10504791 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 || || || || || | ||| ||||| ||||| || ||||| || || ||||| || || Sbjct 10504792 GGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTT 10504851 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| ||||| | || | || || || | ||||| || |||| || | ||| | Sbjct 10504852 GTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGAATCCCAACCGACACCCTCATGAG 10504911 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||| |||| || | | || || || |||| || ||| || |||| Sbjct 10504912 CATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAG 10504971 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 ||| || || || || ||||||| ||||| |||| |||||||| || |||||||| Sbjct 10504972 AGTCTTGAAGCCGAAGAAGTTGTAGGAAAAATCTCTGTCGTAAATGATGGAGGAGTTGAG 10505031 Query 80574 TTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAATAATCGGAGAAT--- 80629 ||||| | || | || | || | || | ||| || || || ||||| | Sbjct 10505032 GCGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTGCTTGGAGATCATGGGAGAGTGGC 10505090 Query 80630 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 80689 |||| || ||| || |||||| ||| | ||||||||||| || || || | | Sbjct 10505091 GTTT---GTTCAGAGGGTTGACATAGGCGAACAGGTCCTCCATCACCTCGCTGAACACCT 10505147 Query 80690 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTG 80749 | || || ||||| || || || || ||||| || || ||||| | ||||| || || | Sbjct 10505148 TCTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGG 10505207 Query 80750 GATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTG 80809 | |||| || || ||||| || || || || || || ||||| | || || || | Sbjct 10505208 GGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCTAGCTCCACGGTGG 10505267 Query 80810 TTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGAT 80869 | || || | || | || || || |||||||| | || | | ||||| | | | Sbjct 10505268 TGACGCCGCTGTACAAGCCCTGTATCACCTTCATGGTGATCTGAGCCGGATCCACAAAGT 10505327 Query 80870 CAGTGTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATGAC 80927 | | ||| | ||| || || || |||| || || || |||||||||||||||||||| Sbjct 10505328 CCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCAAACATGAC 10505385 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| ||| |||| ||||| || || ||||| || | || || || |||||||| | Sbjct 10503159 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATATGGATGT 10503218 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || || || || |||||||||||||| | |||||| ||||| || | | |||| Sbjct 10503219 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 10503278 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 | || | |||||||||| |||||||| | |||| | ||| ||||| Sbjct 10503279 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGATCATCTGG 10503327 >seq7 Length=23593460 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||||| || || || |||||| || || || |||||||| ||||| | ||| | Sbjct 3931325 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 3931266 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || ||||| ||||||||||| || || ||||| |||| Sbjct 3931265 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCGAAGG 3931206 Query 50102 CAACAAGTCTCTCTCC 50117 | || | ||||||||| Sbjct 3931205 CCACCACTCTCTCTCC 3931190 >seq5 Length=26266306 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || ||||| ||||||||||| | || || || ||||| ||||| | ||| | Sbjct 12374825 CCTCATCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGACCTGGCATGAGGCCTCTCTTCT 12374884 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| | || | || ||||| || || ||||| || || || ||||| ||||| | Sbjct 12374885 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAG 12374944 Query 50102 CAACAAGTCTCTCTCC 50117 | ||||| | ||| || Sbjct 12374945 CCACAAGACGCTCCCC 12374960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268575541000