Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10 430 2e-115 seq3 111 2e-19 seq7 84.2 3e-11 >seq10 Length=32721116 Score = 430 bits (476), Expect = 2e-115 Identities = 1293/1979 (65%), Gaps = 31/1979 (2%) Strand=Plus/Plus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||| |||||||| | ||| || | | | || || ||||| || ||||| | | Sbjct 10503421 CTGGATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 10503480 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | | | | ||||| ||||| || || | || || ||||| |||| || || Sbjct 10503481 CTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCT 10503540 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 10503541 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 10503600 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || || || ||||| || |||| || || || || || | || ||| | ||| Sbjct 10503601 GGTGGAGGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGAT 10503660 Query 71289 TTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNN 71347 || || || || || |||| | | |||||| || | || Sbjct 10503661 CTTTTCCTTCAGCAGCTTCC-AGTCCCAAAGGTCGGTCGGCGTCTTCTCCCACATGTCGT 10503719 Query 71348 NNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407 ||||| || || || || || | || || ||||| || || | | Sbjct 10503720 ACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTG 10503779 Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 |||| || || || || ||||| | || | | || ||||| ||||| |||| | | Sbjct 10503780 CGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGT 10503839 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 |||| || ||||| || || || || || | | || || || ||||| || | Sbjct 10503840 TGAGCAGCTGAGCTTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCA 10503899 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 || || ||||| || ||||| || ||||| | ||| || ||| | |||||||| |||| Sbjct 10503900 GACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCAGCTTCAGGAA 10503959 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 || || || || || || || || || ||||| ||| | || ||||| ||| || Sbjct 10503960 CCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACAATTACCTTGGTGACGG 10504019 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAG 71704 || || || || || ||| ||| | || ||| ||| | ||| | | Sbjct 10504020 AGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGATGG 10504079 Query 71705 ATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCA 71762 | ||||| || || ||||| ||||| | | || || || | | | || ||||| Sbjct 10504080 AGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCT--GGTGTACTCCACCACCTCCGTGCA 10504137 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 || || || ||||||||||| || | || || || || ||||| ||| || || || Sbjct 10504138 GAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTC 10504197 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 71881 ||| || || || | || || || ||||| |||| || || || || || | ||||| Sbjct 10504198 CTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAG 10504257 Query 71882 CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATT--GTGTATATAA 71939 | || | ||||| | | |||| |||| ||| | || |||| ||||| | Sbjct 10504258 CTGCT-GCGCCTTCACCACCCTCTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCT 10504316 Query 71940 TCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCA 71998 || |||||||| |||||||| ||| | ||| | |||||||| || | |||||||||| Sbjct 10504317 TC--TCGAACTCCTCTCCCCA-GCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCA 10504373 Query 71999 ATGACCACTC-TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC- 72056 | ||||| || | | || | |||| ||||| || || ||||| ||||| | || Sbjct 10504374 AGGACCAGTCCTGGTTGCTC-TCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCG 10504432 Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 || ||| || ||||||| ||| |||||||| |||||||| ||||| || || || ||||| Sbjct 10504433 TAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAA 10504491 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | | || | ||||| || |||| ||| ||||| | | || || | ||||| Sbjct 10504492 GTCGAACACGTCGAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTT 10504551 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 || ||||| || | ||| | ||||||||| || |||||||||| ||| || | | || Sbjct 10504552 GCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCC 10504611 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||||| || ||||| || | ||| |||||||| | | || || ||| | | Sbjct 10504612 GTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGC 10504671 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||||| || || || || || || | || || | || | || || ||||| Sbjct 10504672 CACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGCACACTGCTTCAGGGTGTCGTAGAT 10504731 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 ||| || || || || ||| ||||| || || || || || |||| || | || | Sbjct 10504732 GCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTT 10504791 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 || || || || || | ||| ||||| ||||| || ||||| || || ||||| || || Sbjct 10504792 GGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTT 10504851 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||| ||||| | || | || || || | || || || |||| || | ||| | Sbjct 10504852 GTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGAATCCCAACCGACACCCTCATGAG 10504911 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| ||||| |||| || | | || || || |||| || |||||| |||| Sbjct 10504912 CATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAG 10504971 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 ||| || || || || ||||||| ||||| |||| |||||||| || || ||||| Sbjct 10504972 AGTCTTGAAGCCGAAGAAGTTGTAGGAAAAATCTCTGTCGTAAATGATGGAGGAGTTGAG 10505031 Query 72657 TTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAA-ATAATCGGAGAATGTT 72715 ||||| | || | || || || | || | |||| | || || ||||| || Sbjct 10505032 GCGGTCCTTGTTTTCCATGACGATGTCGAGCGTC-TGCTTGGAGATCATGGGAGAGTGG- 10505089 Query 72716 TCCCATTTTT---AGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 72772 | || || ||| || |||||| ||| | ||||||||||| || || || | | Sbjct 10505090 --CGTTTGTTCAGAGGGTTGACATAGGCGAACAGGTCCTCCATCACCTCGCTGAACACCT 10505147 Query 72773 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTG 72832 | || || ||||| || || || || ||||| || || ||||| || ||||| || || | Sbjct 10505148 TCTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGG 10505207 Query 72833 GATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTG 72892 | |||| || || ||||| || || || || || || ||||| | || || || | Sbjct 10505208 GGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCTAGCTCCACGGTGG 10505267 Query 72893 TTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGAT 72952 | || || | || | || || || |||||||| | || | | ||||| | | | Sbjct 10505268 TGACGCCGCTGTACAAGCCCTGTATCACCTTCATGGTGATCTGAGCCGGATCCACAAAGT 10505327 Query 72953 CAGTGTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATAAC 73010 | | ||| | ||| || || || |||| || || || ||||||||||||||||| || Sbjct 10505328 CCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCAAACATGAC 10505385 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||| | || ||||| || || ||||| ||| | || || || || || || | Sbjct 10503159 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATATGGATGT 10503218 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||| || || |||||||||||||| | |||||| ||||| || | | |||| Sbjct 10503219 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 10503278 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | || | |||||||||| |||||||| | |||| | ||| ||||| Sbjct 10503279 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGATCATCTGG 10503327 >seq3 Length=27041879 Score = 111 bits (122), Expect = 2e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 ||||||| ||||| ||||| || | |||||| ||| | || || || |||||||||| Sbjct 15252977 TCCATCCATAAAAGTGCATGCTGCTGAGTTTGCCGTAGTTTGGCTCAGCAATGTGAATAT 15253036 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||||| ||||||||| ||| || | ||||| ||||| || | || || | Sbjct 15253037 TCAGAGACTGACTCTGATCGATGTAGGTGCCACGATCTGCTGCCATCTTGAGGACAGTTT 15253096 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | || | |||||||||| |||||||| | |||| | ||| ||||| Sbjct 15253097 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCATCTGG 15253145 >seq7 Length=23593460 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| |||| || || | |||||| || || || |||||||| ||||| | ||| | Sbjct 3931325 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 3931266 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || || || || |||| Sbjct 3931265 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCGAAGG 3931206 Query 42207 CAATAAGTCTCTCTCC 42222 | | | ||||||||| Sbjct 3931205 CCACCACTCTCTCTCC 3931190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138990269000