Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq23 168 2e-36 seq3 152 1e-31 >seq23 Length=24361341 Score = 168 bits (186), Expect = 2e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| || || || | || || || || | || || || ||||| | || ||||| || Sbjct 2609153 TCCTCCCCTCAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGA 2609094 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || | || ||||| || ||||| |||||||| || |||||||| || |||||||| Sbjct 2609093 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 2609034 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || ||||||||||||||||||||||| || || || || | |||||| || || || || Sbjct 2609033 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 2608974 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| || || |||||||| ||||| || ||||| || || |||||||| || Sbjct 2608973 CTCCAGGGTGATAGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 2608923 >seq3 Length=27041879 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | || ||||| || || || ||| Sbjct 11044870 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 11044929 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || ||||| || || || ||||||||||| || || || || Sbjct 11044930 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTTGGCCTTG 11044989 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| ||||| ||||| || || || ||||| ||||| || || Sbjct 11044990 ACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATTGTCTTGCCAGTGAGGGTC 11045049 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || |||||||| Sbjct 11045050 TTTACGAAGATCTGCAT 11045066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398031192700