Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq14 141 6e-29 >seq14 Length=22457735 Score = 141 bits (156), Expect = 6e-29 Identities = 132/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||||||| |||||||||| ||||| | |||||| ||||| || ||||| ||||||||||| Sbjct 14522935 CATGTCCTTGTACTCTGCACCGAAGTGCCTCCATTGGAAACCATACACAGGTCCTAGGTC 14522876 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || ||||| | |||||| || ||||| ||||| | ||| || |||||||| Sbjct 14522875 CCCCTCCTCCCTCTCTGTAAAGCCTAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGTC 14522816 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||||| || || ||||| || ||||| |||| ||||| || || Sbjct 14522815 CCAGATCTTCACTCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 14522768 Score = 93.3 bits (102), Expect = 3e-14 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || |||| || || |||||||| ||||| || |||||||||||||| || || Sbjct 14523819 AGTCCTGTAATGTGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAAAGGC 14523760 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 ||||| | ||||||| | | || | |||||| |||||||| || ||||| ||| || Sbjct 14523759 ACCCCCAGACCCATGT-CGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTTGCA 14523701 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGG 25643 || || |||||||| | || || ||| || || Sbjct 14523700 GACATAGAACTGACAGAGGGCGTGGCAGGGGGG 14523668 Score = 82.4 bits (90), Expect = 5e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 25422 TTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCT 25481 ||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||| || Sbjct 14523966 TTCAGAGGTTCAACGTGATTGAGGTAGACGTGAGCATCTCCCAGAGTGTGGACAAAGTCA 14523907 Query 25482 CCCGG 25486 || || Sbjct 14523906 CCGGG 14523902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340137496364325