Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq20 91.5 8e-14 seq21 87.8 9e-13 seq17 86.0 3e-12 seq4 82.4 4e-11 >seq20 Length=31600912 Score = 91.5 bits (100), Expect = 8e-14 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||| ||| ||| |||||| | |||||||||| ||||||| |||||||||||| Sbjct 17200275 TAATAATAAA--AAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCA 17200218 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 | ||||||| |||||||||||||| ||||| Sbjct 17200217 CCACGCTCTAACCAACTGAGCTAACCGGCCG 17200187 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 14795172 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 14795113 Query 11528 CC 11529 || Sbjct 14795112 CC 14795111 >seq21 Length=29933922 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 15140409 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 15140350 Query 11515 CTGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 15140349 CTGAGCTAACCGGCCGT 15140333 >seq17 Length=12713041 Score = 86.0 bits (94), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| |||| |||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 2442860 AAAAAGAAAATGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 2442801 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 2442800 GCTCTAACCAACTGAGCTAACCGGCC 2442775 >seq4 Length=33259606 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 13028619 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 13028560 Query 11528 CC 11529 || Sbjct 13028559 CC 13028558 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261491120326900