Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq24 159 5e-34 seq23 102 1e-16 >seq24 Length=30408201 Score = 159 bits (176), Expect = 5e-34 Identities = 202/278 (73%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 8699 CCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCC 8758 |||| |||||| | || ||||| ||| | | || | |||||||| |||| || Sbjct 29677463 CCTTGAACGTTGTTGCAAACTAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCAAAGCCG 29677404 Query 8759 ACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATG 8818 || || || ||||||||||| |||||||| | || ||||| ||| ||| |||| Sbjct 29677403 ACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGTGAGCAAATGGGATTCCCCATC 29677344 Query 8819 AGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTG 8878 |||||||||||||| || |||||||||| ||| | || |||| || || |||||||| Sbjct 29677343 AGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACCATCGTCTCCCCAAAAATGGCGTTC 29677284 Query 8879 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAA 8938 | |||||||| ||||| | | ||| ||| | ||||||||| || | |||||| || Sbjct 29677283 GACCGGGGCTTCTCCACGAGCAGGCCGAGGTAGAGCTCCACAGCGTCAACGTCTCCATAC 29677224 Query 8939 AGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || || ||| ||| || ||||| ||||||||||| Sbjct 29677223 AGCTCCTCCAGTATGGCGGCCATTTCTTTTTCTCCTGT 29677186 Score = 129 bits (142), Expect = 8e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || |||| |||||| |||| ||||||||| ||| ||||||| ||| ||||| || Sbjct 29675875 TCACCAATAAGGATGAGCCGAGAGGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGA 29675816 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || |||| ||| || ||||| | |||||| || | ||||||||| || ||||||||| Sbjct 29675815 ACTTCCTTCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATC 29675756 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 ||||| || || ||||| || || ||||| || || ||||| Sbjct 29675755 ATGAGGCCTGGGACCAGACCGAACGCCTCGTGGCCAACAGC 29675715 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||| ||| || | ||| ||||| ||||| ||||| ||||| || | | Sbjct 29674895 TCACCTACGACTCCCATAGGGGTTGGGCAATCAGCCGGAACTGGAGGAAGGGCACGGGTA 29674836 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||| |||||||| | |||||||||||| |||| | || ||||| |||||| | Sbjct 29674835 TAGTAGGACAGATTGGAATAGGCTTCCCAGCTTTTGTATCCATAATCCGCATTGTAGGTA 29674776 Query 10407 GGAGGGCTGTCAATCAAATCGGATC 10431 ||||| |||||||||| || ||||| Sbjct 29674775 GGAGGACTGTCAATCATATGGGATC 29674751 >seq23 Length=24361341 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || ||||| |||||||| |||||||| || ||||| || ||| ||| ||| ||||||| Sbjct 9080132 CCTCCGAATGTGCTGGGCTTCCAGTATCCTGGGGAACATATGGGGTTACCCAGGAGGCCT 9080191 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 ||||||||||| || || |||| || | ||||| || || || || || || || Sbjct 9080192 TTGAGGGAAAAGGGGGCACCCATTTCCACCATGCTTTCTCCAAATATCGCCCCTGGTCGA 9080251 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 | | | |||| || || |||| ||| || || | || |||||||| || || || Sbjct 9080252 GTCCTCTCCAGCAGTAACCCGGGGTAAAATTCAAGAGTGTCGATGTCCCCATAGAG 9080307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708524578586000