Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq25 187 4e-43 seq9 172 9e-39 seq6 163 4e-36 >seq25 Length=55650406 Score = 187 bits (206), Expect = 4e-43 Identities = 223/301 (74%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | || || || ||||||||||| ||||| || ||||| || Sbjct 45424921 CGCAAAACGTCATCGTAAAGTGCTGCGCGACAACATCCAAGGCATCACTAAACCAGCCAT 45424980 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| |||||||| ||||| ||| | |||| | |||||||||| | Sbjct 45424981 CCGCCGTCTCGCTCGCCGTGGTGGTGTCAAACGTATTGCTGGCCTCATCTATGAAGAAAC 45425040 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | |||||| | | ||| || | ||||||| || ||| || || Sbjct 45425041 CCGTGGTGTGCTCAAGGTTTTCCTCGAAAACGTCATTCGTGATGCTGTCACCTACACTGA 45425100 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || |||||||| ||||| ||||||| |||||||||| | ||||| || || Sbjct 45425101 GCATGCCAAGCGTAAGACCGTCACAGCCATGGACGTCGTCTATGCTCTTAAACGCCAGGG 45425160 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCAAACTTCGAATGGAAGAATTAA 16731 |||| |||| ||||| || |||||| | || ||| || ||| || ||| ||| | Sbjct 45425161 TCGTACTCTTTACGGTTTCGGCGGTTAATTTGCT--TCATAC--CGACTGAAAGCATTTA 45425216 Query 16732 C 16732 | Sbjct 45425217 C 45425217 Score = 159 bits (176), Expect = 5e-35 Identities = 198/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || ||||||||||| |||||||||||||| || || Sbjct 37027424 CGCCAAGCGGCACCGTAAAGTCCTCCGCGATAACATCCAGGGAATCACCAAGCCGGCCAT 37027365 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || |||||||||||||| |||| || | |||| || |||| Sbjct 37027364 CCGCCGTCTGGCTCGCCGCGGTGGAGTCAAGCGAATCTCCGGCCTCATCTACGAGGAGAC 37027305 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| ||| || | || ||||| Sbjct 37027304 CCGCGGGGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGTGACGCCGTTACGTACACCGA 37027245 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || |||| | || || Sbjct 37027244 GCACGCAAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 37027185 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || || ||||| || Sbjct 37027184 CCGCACTCTGTACGGCTTCGGGGGTTAAACT 37027154 >seq9 Length=19682451 Score = 172 bits (190), Expect = 9e-39 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| |||||||| ||||| ||||| Sbjct 3155382 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACTAAGCCCGCTAT 3155441 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || ||||||||||||||| |||| || | |||| || |||| Sbjct 3155442 CCGCCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 3155501 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| |||||||| |||||| || ||| ||||| Sbjct 3155502 CCGCGGTGTGCTCAAGGTTTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGA 3155561 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || || || | || | || || Sbjct 3155562 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 3155621 Query 16672 CCG 16674 ||| Sbjct 3155622 CCG 3155624 Score = 172 bits (190), Expect = 9e-39 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| |||||||| ||||| ||||| Sbjct 3175829 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACTAAGCCCGCTAT 3175770 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || ||||||||||||||| |||| || | |||| || |||| Sbjct 3175769 CCGCCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 3175710 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| |||||||| |||||| || ||| ||||| Sbjct 3175709 CCGCGGTGTGCTCAAGGTTTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGA 3175650 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || || || | || | || || Sbjct 3175649 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 3175590 Query 16672 CCG 16674 ||| Sbjct 3175589 CCG 3175587 Score = 172 bits (190), Expect = 9e-39 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| |||||||| ||||| ||||| Sbjct 3186725 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACTAAGCCCGCTAT 3186666 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || ||||||||||||||| |||| || | |||| || |||| Sbjct 3186665 CCGCCGCCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 3186606 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| |||||||| |||||| || ||| ||||| Sbjct 3186605 CCGCGGTGTGCTCAAGGTTTTCCTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGA 3186546 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || || || | || | || || Sbjct 3186545 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTACGCTCTCAAGAGGCAGGG 3186486 Query 16672 CCG 16674 ||| Sbjct 3186485 CCG 3186483 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 535577 CGCCAAGCGGCACCGCAAAGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 535518 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || ||||||||||| |||| || || |||| || |||| Sbjct 535517 CCGCCGCCTGGCTCGCCGCGGCGGAGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGAC 535458 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| ||| || | || || || Sbjct 535457 CCGCGGCGTGCTGAAGGTGTTCCTAGAGAACGTGATCCGTGACGCCGTGACGTACACGGA 535398 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 535397 GCACGCCAAGAGGAAGACGGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGGCAGGG 535338 Query 16672 CCG 16674 ||| Sbjct 535337 CCG 535335 >seq6 Length=24035278 Score = 163 bits (180), Expect = 4e-36 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 5697990 CGCCAAGCGGCACCGTAAAGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCTAT 5698049 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||||||||| |||| || | |||| || |||| Sbjct 5698050 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGGATCTCCGGCCTCATCTACGAGGAGAC 5698109 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| ||| || || || ||||| Sbjct 5698110 CCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACGTACACCGA 5698169 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || |||| | || || Sbjct 5698170 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTGAAGAGGCAGGG 5698229 Query 16672 CCG 16674 ||| Sbjct 5698230 CCG 5698232 Score = 159 bits (176), Expect = 5e-35 Identities = 181/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 1765443 CGCCAAGCGGCACCGTAAAGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCTAT 1765502 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || ||||||||||| |||| || | |||| || |||| Sbjct 1765503 CCGCCGTCTGGCTCGCCGCGGGGGAGTCAAGCGGATCTCCGGTCTCATCTACGAGGAGAC 1765562 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| ||| || || || ||||| Sbjct 1765563 CCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGTGACGCCGTCACGTACACCGA 1765622 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || |||| | || || Sbjct 1765623 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTGAAGAGGCAGGG 1765682 Query 16672 CCG 16674 ||| Sbjct 1765683 CCG 1765685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075177142325