Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq10 230 2e-55 seq3 113 4e-20 seq23 95.1 1e-14 >seq10 Length=32721116 Score = 230 bits (254), Expect = 2e-55 Identities = 974/1511 (64%), Gaps = 48/1511 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| | ||| ||||| |||| || ||| | || || | ||| ||| | | Sbjct 10503509 TTGACAATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCC 10503568 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || ||||| | || ||||||||| ||||| | Sbjct 10503569 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGCGCCAGC 10503628 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || |||||| || ||| | |||||| ||| ||| ||||| Sbjct 10503629 AGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAA 10503688 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || |||||| || ||||||||||||||||| | ||||||| |||| |||| | Sbjct 10503689 AGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAG 10503748 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAG 145355 || | | | ||| ||| || | || ||||||||||| || |||||||| | Sbjct 10503749 CCCTCGTACGTCTCGTAGGGGCCG--AGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGG 10503806 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || || || || |||||| || || ||||||||||| ||||| || ||| Sbjct 10503807 CGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGA 10503866 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 |||| |||| ||| | || || ||||| || ||||| | || | ||||| |||| Sbjct 10503867 ACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCC 10503926 Query 145476 GATGTTTCATGTTG-----CTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGAT 145530 || | ||||| |||| | || || | ||| | | ||| |||||| Sbjct 10503927 TGTGGCGCTTGTTGGAAGTCTCAGCTTCAGGAACCGGGTAGTAGTT-GAT----GTCGAT 10503981 Query 145531 AATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAA 145590 || || || | |||| ||| | |||||| || | | || ||| | ||||| || Sbjct 10503982 GATCTTGTTGAGGTTTTTCACAATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAA 10504041 Query 145591 ---CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 ||| ||| ||| ||| | |||| |||||| || |||| || || || Sbjct 10504042 AGTCCG---CTCTGGCGTGACGT-ACA--TGTTGAGGGCGATGGAGGCCAGGTTGCAGAC 10504095 Query 145648 TGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGAT 145707 ||| ||| || | | |||| | || | ||| | ||| | ||||| || ||||| Sbjct 10504096 GGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGAT 10504155 Query 145708 GGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 ||| ||||| || ||||| || || |||| |||||| |||||||||||||||||||| || Sbjct 10504156 GGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGG 10504215 Query 145768 TCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCACC 145825 || || || ||| | ||| | ||| || || || | |||||| |||| Sbjct 10504216 GGTCCCGGTTTCGGTCTGGGACTCGATGAT--GGCGTACCAGAGCTGCTGCGCCTTCACC 10504273 Query 145826 TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCG 145885 | || | || || | || ||||| ||||||||| ||| ||| | || Sbjct 10504274 ACCCTCTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCC 10504333 Query 145886 TAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCG 145945 |||| ||| ||| || ||||||| | |||||||||||| ||||| | |||| Sbjct 10504334 CAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTC 10504393 Query 145946 TTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTT 146003 | || | || ||| |||| || || | ||||| ||||| | | ||| | || || Sbjct 10504394 TCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTC 10504453 Query 146004 TGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCC 146063 ||| ||||| || |||| ||||| | || | | | ||| ||||| Sbjct 10504454 TGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCC 10504511 Query 146064 ACGGTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCACGTGAC 146120 | || || | || | ||||| ||| || | || | ||||| |||||||| |||| | Sbjct 10504512 ATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTACC 10504571 Query 146121 GTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAG 146180 | | ||||||| | || | || ||| ||| | | ||| ||| |||||| || Sbjct 10504572 GAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGC 10504631 Query 146181 AGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGT 146240 || | | || || || | ||| || |||||| | ||||| || Sbjct 10504632 CTGCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCTATCCCGCCAGCGG 10504691 Query 146241 ACTTGGATAT-AGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--C 146297 ||||||| || ||| || || | || || ||||||||||| || ||||| ||| | Sbjct 10504692 ACTTGGAAATGAGC-GCACACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCC 10504750 Query 146298 TTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG--CGTCCCCGCCGAGAA 146355 ||| ||| ||||||| ||||| | ||| ||||| | ||| ||||| || ||| Sbjct 10504751 TTC--ATGGCGAGCAGGAAGCAACTGGACAGCTGCGGC--CGGTTGGTCCCGGCGTTGAA 10504806 Query 146356 CAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAG 146414 | ||||| ||||| || || || || || | || | || || |||| | Sbjct 10504807 GAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCG-ACAGGAGGTTGTAGGTCTCGACGG 10504865 Query 146415 CGTCTTGAATGTCGTCG-CCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473 || | | ||||| ||| || ||||| || | | || | |||||||||||| || || Sbjct 10504866 CGGCGTCGATGTC-TCGCCCGTGAATCCCAACCGACACCCTCATGAGCATGTGCTGCGGT 10504924 Query 146474 CGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCG 146533 ||||| ||||||| || ||||| | || ||| |||||| || ||| | ||| Sbjct 10504925 CGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCG 10504984 Query 146534 AAAAATTTGTA 146544 || || ||||| Sbjct 10504985 AAGAAGTTGTA 10504995 >seq3 Length=27041879 Score = 113 bits (124), Expect = 4e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||||| || ||||| | ||| | |||||| | |||||||| |||||||||||||| | Sbjct 15255860 TGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 15255919 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | | ||||||||||| ||||||||||||||||||||||| || ||||| ||||| Sbjct 15255920 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCG 15255979 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 15255980 ACTCGATGAT 15255989 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||| || || | || | ||| || || || || |||||||| ||| Sbjct 11044839 GCCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 11044898 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 11044899 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGG 11044958 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || ||||| || |||||| ||||| | ||| | || ||| ||| || | Sbjct 11044959 GATGCCCTCTTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCAC 11045018 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || |||||||| |||||||| Sbjct 11045019 CTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCAT 11045066 >seq23 Length=24361341 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || | |||||| || || |||||| || || ||||| ||||| Sbjct 2609123 GGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCC 2609064 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-T 131155 || |||| | | ||||||||| ||||| || |||||||| || ||| | | ||| | Sbjct 2609063 AGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC-TGAATCTTTGCCT 2609005 Query 131156 TGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAG 131215 | | | ||| | ||||| ||| ||| | || | ||| | || || || || || | Sbjct 2609004 TCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATAGTCTTCCCAGTGAGGG 2608945 Query 131216 TTTTTACGAAAATCTGCAT 131234 |||| |||||||||||||| Sbjct 2608944 TTTTCACGAAAATCTGCAT 2608926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012652496000