Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq25 131 1e-25 seq11 122 6e-23 seq20 104 2e-17 seq13 98.7 7e-16 seq9 91.5 1e-13 >seq25 Length=55650406 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 46650930 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 46650871 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 46650870 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 46650836 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| | | ||||| || |||||||| Sbjct 38041317 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGATGTTAGGGACAGTGGGAATCTCGT 38041376 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 38041377 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 38041411 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 46215023 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCGTCTATCGGTCTCAT 46215082 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 46215083 GCCCGTATTTAGCCTTA 46215099 >seq11 Length=26077971 Score = 122 bits (134), Expect = 6e-23 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| || |||||||| ||||||||| |||||||| Sbjct 22440880 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGTGCTCAGACCCAGTTTGATACCAAAAACG 22440821 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| ||| | | |||| ||||||| | ||||| || | Sbjct 22440820 ATCGTTACATCGTCAACGGATCCCATGAGGCGAACAAGTTGCAGGATATGCTTGATGGGT 22440761 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || ||||||||||||| || || || ||||| || || || || Sbjct 22440760 TCATCAGAAAATTTGTGCTGTGTCCCGAGTGTGACAACCCTGAAACTGACCT 22440709 >seq20 Length=31600912 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| | || ||||| || |||||| | Sbjct 10995104 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCAT 10995163 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| || ||| ||||||||||||||||||||| Sbjct 10995164 TCATCCATTTATGTGCGTCACTAATTAGATGACGA 10995198 >seq13 Length=28566418 Score = 98.7 bits (108), Expect = 7e-16 Identities = 78/94 (83%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||| ||||||||||||||||||| ||| | | ||||| || |||||||| Sbjct 18298391 AAGCCCGTTTCCTTGGCTGTGGTTTCGCTGGATGGGAATTAGGGACAGTGGGAATCTCGT 18298332 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 | |||| |||||| ||||||||||||||||| || Sbjct 18298331 TCATCCATTCATGTGCGTCACTAATTAGATGGCG 18298298 >seq9 Length=19682451 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || |||||| | ||| ||||||| || || ||| | || ||||| || |||||||| Sbjct 15939074 AACCCCGTTTCATTGTCTGTGGTCTCTCTGGATGGGAGTTAGGGACAGTGGGAATCTCGT 15939133 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||||||||||| ||||||||||||||||||||| Sbjct 15939134 TCATCCTTTCATGTGCGTCACTAATTAGATGACGA 15939168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947097945775